miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 3' -54.9 NC_005261.1 + 90123 0.66 0.924134
Target:  5'- gCGGCC-CGCGGcGAgGGCgaggagggggGCGAugGg -3'
miRNA:   3'- -GUCGGaGCGCC-UUgUCGaa--------CGCUugC- -5'
23732 3' -54.9 NC_005261.1 + 33793 0.66 0.906427
Target:  5'- gGGCCccgCGCGGGcgGCGGgCUUGUcuuuGGGCGg -3'
miRNA:   3'- gUCGGa--GCGCCU--UGUC-GAACG----CUUGC- -5'
23732 3' -54.9 NC_005261.1 + 100900 0.66 0.929544
Target:  5'- gCGGCCUCGCcGcGCAccGCc-GCGAGCGu -3'
miRNA:   3'- -GUCGGAGCGcCuUGU--CGaaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 131457 0.66 0.912575
Target:  5'- -cGCCUCGCGGGcGCcucccGCcuccGCGAGCGc -3'
miRNA:   3'- guCGGAGCGCCU-UGu----CGaa--CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 71963 0.66 0.918478
Target:  5'- uCGGCgCggggCGCGGAGCGcGCggcaggUGCGcAGCGu -3'
miRNA:   3'- -GUCG-Ga---GCGCCUUGU-CGa-----ACGC-UUGC- -5'
23732 3' -54.9 NC_005261.1 + 121485 0.66 0.912575
Target:  5'- cCGGCUgcCGCcacGGGGCGGCgggGCGGGCa -3'
miRNA:   3'- -GUCGGa-GCG---CCUUGUCGaa-CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 73216 0.67 0.879441
Target:  5'- -cGCCUCGaGGGgcGCGGUggccGCGAGCGc -3'
miRNA:   3'- guCGGAGCgCCU--UGUCGaa--CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 118162 0.67 0.900037
Target:  5'- uGGCCgUCGCGGcGgGGCUUGCcgucuGGGCc -3'
miRNA:   3'- gUCGG-AGCGCCuUgUCGAACG-----CUUGc -5'
23732 3' -54.9 NC_005261.1 + 112329 0.67 0.900037
Target:  5'- uGGCCUCGCGcGACuGCaaGCGGGg- -3'
miRNA:   3'- gUCGGAGCGCcUUGuCGaaCGCUUgc -5'
23732 3' -54.9 NC_005261.1 + 82561 0.67 0.900037
Target:  5'- gCGGCCgCGCGccgcAGCAGCUcGCGcAGCGc -3'
miRNA:   3'- -GUCGGaGCGCc---UUGUCGAaCGC-UUGC- -5'
23732 3' -54.9 NC_005261.1 + 31680 0.67 0.900037
Target:  5'- uGGCCgcggCGCGGcGGCGGCUgaucGUGAuCGa -3'
miRNA:   3'- gUCGGa---GCGCC-UUGUCGAa---CGCUuGC- -5'
23732 3' -54.9 NC_005261.1 + 3770 0.67 0.88654
Target:  5'- -cGCCUCGCGGcaggccGCAGCgcaGCGGu-- -3'
miRNA:   3'- guCGGAGCGCCu-----UGUCGaa-CGCUugc -5'
23732 3' -54.9 NC_005261.1 + 97585 0.67 0.900037
Target:  5'- uGGCgCggGCGGAGCgGGCggaGCGGGCGg -3'
miRNA:   3'- gUCG-GagCGCCUUG-UCGaa-CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 134193 0.67 0.893407
Target:  5'- gGGCCUggCGCGGcuCGGCgcGCGGgucGCGg -3'
miRNA:   3'- gUCGGA--GCGCCuuGUCGaaCGCU---UGC- -5'
23732 3' -54.9 NC_005261.1 + 72455 0.67 0.864566
Target:  5'- -cGCC-CGCGGcgagcGCGGCgagcGCGAGCGc -3'
miRNA:   3'- guCGGaGCGCCu----UGUCGaa--CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 73265 0.67 0.864566
Target:  5'- --aUCUCGCGGAgGCAGUa-GCGGGCGa -3'
miRNA:   3'- gucGGAGCGCCU-UGUCGaaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 135085 0.67 0.864566
Target:  5'- gCGGgCUCGCGGcccGGCGGCggagcGCGAGgCGg -3'
miRNA:   3'- -GUCgGAGCGCC---UUGUCGaa---CGCUU-GC- -5'
23732 3' -54.9 NC_005261.1 + 47879 0.67 0.872115
Target:  5'- gCAGCgUcCGgGGAGCGGCggcgGCGGcGCGa -3'
miRNA:   3'- -GUCGgA-GCgCCUUGUCGaa--CGCU-UGC- -5'
23732 3' -54.9 NC_005261.1 + 134362 0.67 0.879441
Target:  5'- -cGCCgCGCGGGggGCGGCgccgcugGCGAcgGCGa -3'
miRNA:   3'- guCGGaGCGCCU--UGUCGaa-----CGCU--UGC- -5'
23732 3' -54.9 NC_005261.1 + 31851 0.67 0.88654
Target:  5'- uGGCCUCGCGGcGCGuCUU-CGGGCc -3'
miRNA:   3'- gUCGGAGCGCCuUGUcGAAcGCUUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.