miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 3' -54.9 NC_005261.1 + 136916 0.67 0.879441
Target:  5'- gGGCCgCGCGGccGCGGCgcaUGUGGugGu -3'
miRNA:   3'- gUCGGaGCGCCu-UGUCGa--ACGCUugC- -5'
23732 3' -54.9 NC_005261.1 + 56418 0.67 0.893407
Target:  5'- -cGCUUCGCGGcGCAcccGCcUGCGGagGCGg -3'
miRNA:   3'- guCGGAGCGCCuUGU---CGaACGCU--UGC- -5'
23732 3' -54.9 NC_005261.1 + 134193 0.67 0.893407
Target:  5'- gGGCCUggCGCGGcuCGGCgcGCGGgucGCGg -3'
miRNA:   3'- gUCGGA--GCGCCuuGUCGaaCGCU---UGC- -5'
23732 3' -54.9 NC_005261.1 + 112329 0.67 0.900037
Target:  5'- uGGCCUCGCGcGACuGCaaGCGGGg- -3'
miRNA:   3'- gUCGGAGCGCcUUGuCGaaCGCUUgc -5'
23732 3' -54.9 NC_005261.1 + 44857 0.67 0.893407
Target:  5'- gCAGCCgCGaGGAAgAGCgccgccGCGAGCGc -3'
miRNA:   3'- -GUCGGaGCgCCUUgUCGaa----CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 136600 0.67 0.88654
Target:  5'- cCGGCgcagCGUGGAGCGGCgcGCGcGCGc -3'
miRNA:   3'- -GUCGga--GCGCCUUGUCGaaCGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 57275 0.67 0.88654
Target:  5'- -cGCaUCGCGcGGCAGCUgcucGCGAGCa -3'
miRNA:   3'- guCGgAGCGCcUUGUCGAa---CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 44429 0.67 0.88654
Target:  5'- -cGCCgacgaCGUGGAGCGGCUcucgcggcugUGgGAGCa -3'
miRNA:   3'- guCGGa----GCGCCUUGUCGA----------ACgCUUGc -5'
23732 3' -54.9 NC_005261.1 + 31680 0.67 0.900037
Target:  5'- uGGCCgcggCGCGGcGGCGGCUgaucGUGAuCGa -3'
miRNA:   3'- gUCGGa---GCGCC-UUGUCGAa---CGCUuGC- -5'
23732 3' -54.9 NC_005261.1 + 82561 0.67 0.900037
Target:  5'- gCGGCCgCGCGccgcAGCAGCUcGCGcAGCGc -3'
miRNA:   3'- -GUCGGaGCGCc---UUGUCGAaCGC-UUGC- -5'
23732 3' -54.9 NC_005261.1 + 73216 0.67 0.879441
Target:  5'- -cGCCUCGaGGGgcGCGGUggccGCGAGCGc -3'
miRNA:   3'- guCGGAGCgCCU--UGUCGaa--CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 74701 0.67 0.893407
Target:  5'- uGGCCgccgcgcgggCGCGGAaccgggccgcgGCAGCggccGCGGACa -3'
miRNA:   3'- gUCGGa---------GCGCCU-----------UGUCGaa--CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 19161 0.67 0.88654
Target:  5'- cCAGCCg-GCGGAucacgcgaaGCAGCUgcCGGGCGc -3'
miRNA:   3'- -GUCGGagCGCCU---------UGUCGAacGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 1029 0.67 0.900037
Target:  5'- gGGCUuUUGCGGAggGCGGCggGCGGcgGCGu -3'
miRNA:   3'- gUCGG-AGCGCCU--UGUCGaaCGCU--UGC- -5'
23732 3' -54.9 NC_005261.1 + 118162 0.67 0.900037
Target:  5'- uGGCCgUCGCGGcGgGGCUUGCcgucuGGGCc -3'
miRNA:   3'- gUCGG-AGCGCCuUgUCGAACG-----CUUGc -5'
23732 3' -54.9 NC_005261.1 + 97585 0.67 0.900037
Target:  5'- uGGCgCggGCGGAGCgGGCggaGCGGGCGg -3'
miRNA:   3'- gUCG-GagCGCCUUG-UCGaa-CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 21181 0.68 0.856801
Target:  5'- gCAGCCgcuggCGCGaGcGCGGCc-GCGGACGc -3'
miRNA:   3'- -GUCGGa----GCGC-CuUGUCGaaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 48305 0.68 0.856801
Target:  5'- aGGCCUCGgGGGGCgcgucgggcccgGGCUcGgGGGCGc -3'
miRNA:   3'- gUCGGAGCgCCUUG------------UCGAaCgCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 43383 0.68 0.856801
Target:  5'- uCGGCCUCGCGGuGCcggcaccguccaGGCgccGgGGGCGg -3'
miRNA:   3'- -GUCGGAGCGCCuUG------------UCGaa-CgCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 72323 0.68 0.856801
Target:  5'- -uGCCcCGCGGcccaaGGCAGUggaugGCGAACGu -3'
miRNA:   3'- guCGGaGCGCC-----UUGUCGaa---CGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.