Results 61 - 80 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 4428 | 0.68 | 0.832273 |
Target: 5'- aGGCCUCGcCGGAGggcguCAGCa-GCGGGCc -3' miRNA: 3'- gUCGGAGC-GCCUU-----GUCGaaCGCUUGc -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 3539 | 0.68 | 0.856801 |
Target: 5'- -cGCCUCgGCGc-GCAGCgcgGCGGGCGc -3' miRNA: 3'- guCGGAG-CGCcuUGUCGaa-CGCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 83299 | 0.68 | 0.856801 |
Target: 5'- aCGGCUgCGCGGGgucguGCAGCU--CGGGCGg -3' miRNA: 3'- -GUCGGaGCGCCU-----UGUCGAacGCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 35921 | 0.68 | 0.832273 |
Target: 5'- gCGGCCcCGCGccGCAGCccaGCGGGCGc -3' miRNA: 3'- -GUCGGaGCGCcuUGUCGaa-CGCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 74067 | 0.68 | 0.832273 |
Target: 5'- gCAGCUgcgcgaCGCGGccCGGCUUGUGcGCGa -3' miRNA: 3'- -GUCGGa-----GCGCCuuGUCGAACGCuUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 99089 | 0.68 | 0.832273 |
Target: 5'- gGGCggCGCGGcgcgcAGCGGCUUGCucGCGa -3' miRNA: 3'- gUCGgaGCGCC-----UUGUCGAACGcuUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 125762 | 0.68 | 0.838155 |
Target: 5'- gGGCUgcCGCGGGcuCGGCUaaggccaaggccgcUGCGAACGg -3' miRNA: 3'- gUCGGa-GCGCCUu-GUCGA--------------ACGCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 351 | 0.68 | 0.840648 |
Target: 5'- gCAGCCcggCGCGGcccGGCGGCgguggcgGCGGugGc -3' miRNA: 3'- -GUCGGa--GCGCC---UUGUCGaa-----CGCUugC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 59465 | 0.68 | 0.840648 |
Target: 5'- gCGGCgUCGgGGGGCAGCgccgGCGcGGCc -3' miRNA: 3'- -GUCGgAGCgCCUUGUCGaa--CGC-UUGc -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 71190 | 0.68 | 0.840648 |
Target: 5'- gCAG-CUCGCGGGGCgcggccAGCUgcGCGAugGu -3' miRNA: 3'- -GUCgGAGCGCCUUG------UCGAa-CGCUugC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 73582 | 0.68 | 0.840648 |
Target: 5'- gGGCCccccCGCGGcggaGGCGGCggccGCGAGCGc -3' miRNA: 3'- gUCGGa---GCGCC----UUGUCGaa--CGCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 138022 | 0.68 | 0.840648 |
Target: 5'- gCAGCCcggCGCGGcccGGCGGCgguggcgGCGGugGc -3' miRNA: 3'- -GUCGGa--GCGCC---UUGUCGaa-----CGCUugC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 11839 | 0.68 | 0.848826 |
Target: 5'- gGGCCcCGCGGGcGCGcGUUcGCGAGCGc -3' miRNA: 3'- gUCGGaGCGCCU-UGU-CGAaCGCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 20113 | 0.68 | 0.848826 |
Target: 5'- gCGGCaaggcgCGCGGGcccgcaGCGGCUccGCGAGCGc -3' miRNA: 3'- -GUCGga----GCGCCU------UGUCGAa-CGCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 126953 | 0.68 | 0.848826 |
Target: 5'- -cGCCgggCGCgGGGGCGGCagcGCGAACc -3' miRNA: 3'- guCGGa--GCG-CCUUGUCGaa-CGCUUGc -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 21181 | 0.68 | 0.856801 |
Target: 5'- gCAGCCgcuggCGCGaGcGCGGCc-GCGGACGc -3' miRNA: 3'- -GUCGGa----GCGC-CuUGUCGaaCGCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 48305 | 0.68 | 0.856801 |
Target: 5'- aGGCCUCGgGGGGCgcgucgggcccgGGCUcGgGGGCGc -3' miRNA: 3'- gUCGGAGCgCCUUG------------UCGAaCgCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 43383 | 0.68 | 0.856801 |
Target: 5'- uCGGCCUCGCGGuGCcggcaccguccaGGCgccGgGGGCGg -3' miRNA: 3'- -GUCGGAGCGCCuUG------------UCGaa-CgCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 72323 | 0.68 | 0.856801 |
Target: 5'- -uGCCcCGCGGcccaaGGCAGUggaugGCGAACGu -3' miRNA: 3'- guCGGaGCGCC-----UUGUCGaa---CGCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 94858 | 0.68 | 0.823711 |
Target: 5'- uCGGCgCUCGCGc-ACGGCccggGCGGGCGg -3' miRNA: 3'- -GUCG-GAGCGCcuUGUCGaa--CGCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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