miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 3' -54.9 NC_005261.1 + 38941 0.7 0.719615
Target:  5'- gCGGCCggGCGGGccGCGGCgcGCGGGCu -3'
miRNA:   3'- -GUCGGagCGCCU--UGUCGaaCGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 128523 0.7 0.719615
Target:  5'- gCAGCCUCcugGCGGcugGAguGCUgcUGCGAACc -3'
miRNA:   3'- -GUCGGAG---CGCC---UUguCGA--ACGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 39885 0.7 0.729658
Target:  5'- aGGCCgcgcgCGCGGcuguGCAGCUggcGCGcGCGg -3'
miRNA:   3'- gUCGGa----GCGCCu---UGUCGAa--CGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 55174 0.7 0.739614
Target:  5'- cCGGCggCUCGCGGGGCGGaucgGCGcACGg -3'
miRNA:   3'- -GUCG--GAGCGCCUUGUCgaa-CGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 33762 0.7 0.739614
Target:  5'- gGGCCcgcUCGCGGGGCccGCg-GCGAGCGc -3'
miRNA:   3'- gUCGG---AGCGCCUUGu-CGaaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 22739 0.7 0.739614
Target:  5'- cCAGUCgggCGCGGGGCGGCg-GCGGcccACGc -3'
miRNA:   3'- -GUCGGa--GCGCCUUGUCGaaCGCU---UGC- -5'
23732 3' -54.9 NC_005261.1 + 128064 0.7 0.749473
Target:  5'- gGGCCaUgGCGGGcgGGCggGCGAGCGa -3'
miRNA:   3'- gUCGG-AgCGCCUugUCGaaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 42650 0.69 0.768862
Target:  5'- gCGGCCgCGCGGAAcCAGCcaaGCG-GCGg -3'
miRNA:   3'- -GUCGGaGCGCCUU-GUCGaa-CGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 14877 0.69 0.768862
Target:  5'- -cGCCaUCGCGGcGCAGagcGCGAGCa -3'
miRNA:   3'- guCGG-AGCGCCuUGUCgaaCGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 58340 0.69 0.779317
Target:  5'- -cGCCUCGCGGAGCcGCgccggccaguccaggUGUGcGGCGa -3'
miRNA:   3'- guCGGAGCGCCUUGuCGa--------------ACGC-UUGC- -5'
23732 3' -54.9 NC_005261.1 + 33582 0.69 0.787748
Target:  5'- cCAGCCcCGCgagcaccaGGGGCGGCgccggcGCGGGCGg -3'
miRNA:   3'- -GUCGGaGCG--------CCUUGUCGaa----CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 136466 0.69 0.796979
Target:  5'- gCAGCCccagacucgCGCGcGGGCAGCa-GCGAGCa -3'
miRNA:   3'- -GUCGGa--------GCGC-CUUGUCGaaCGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 68695 0.69 0.803349
Target:  5'- gGGCCggCGCGGAcgacgGCGGCgccggcccucacgcgGCGGGCGc -3'
miRNA:   3'- gUCGGa-GCGCCU-----UGUCGaa-------------CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 66480 0.69 0.806056
Target:  5'- -cGuCCUCGCGGuACAGCga--GAGCGg -3'
miRNA:   3'- guC-GGAGCGCCuUGUCGaacgCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 68121 0.69 0.806056
Target:  5'- gAGCUgCGCGGGccGCGGCgcgGCGAccGCGc -3'
miRNA:   3'- gUCGGaGCGCCU--UGUCGaa-CGCU--UGC- -5'
23732 3' -54.9 NC_005261.1 + 65536 0.69 0.806056
Target:  5'- gCGGCCgCGCGGGcaGCAGCgcgUGCcaGGCGu -3'
miRNA:   3'- -GUCGGaGCGCCU--UGUCGa--ACGc-UUGC- -5'
23732 3' -54.9 NC_005261.1 + 46583 0.69 0.806056
Target:  5'- gCGGCCUCGCGcGAcACGGCcc-CGGGCa -3'
miRNA:   3'- -GUCGGAGCGC-CU-UGUCGaacGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 37229 0.69 0.814969
Target:  5'- gGGCUUgCGCGGcGCGGCgcGUGGACa -3'
miRNA:   3'- gUCGGA-GCGCCuUGUCGaaCGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 44032 0.68 0.823711
Target:  5'- gCGGCCgccgCGCGGcGGCcGCggGCGGGCa -3'
miRNA:   3'- -GUCGGa---GCGCC-UUGuCGaaCGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 99782 0.68 0.823711
Target:  5'- gCGGCCcgggucccagUCGCGGcGCGGaugGCGAACa -3'
miRNA:   3'- -GUCGG----------AGCGCCuUGUCgaaCGCUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.