miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 3' -54.9 NC_005261.1 + 121485 0.66 0.912575
Target:  5'- cCGGCUgcCGCcacGGGGCGGCgggGCGGGCa -3'
miRNA:   3'- -GUCGGa-GCG---CCUUGUCGaa-CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 101744 0.66 0.912575
Target:  5'- gGGCCUCGCucGGCAGCUccagGUGcACGc -3'
miRNA:   3'- gUCGGAGCGccUUGUCGAa---CGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 71791 0.66 0.912575
Target:  5'- gCAGCUgagCGCGGccCGGCccgUGgGGACGu -3'
miRNA:   3'- -GUCGGa--GCGCCuuGUCGa--ACgCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 75755 0.66 0.912575
Target:  5'- -cGCCUgcUGUGGAACGGCaacguguacGCGGACa -3'
miRNA:   3'- guCGGA--GCGCCUUGUCGaa-------CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 99007 0.66 0.906427
Target:  5'- uCAGCgUCGC-GAGCGGCggcGCGGcgGCGc -3'
miRNA:   3'- -GUCGgAGCGcCUUGUCGaa-CGCU--UGC- -5'
23732 3' -54.9 NC_005261.1 + 33793 0.66 0.906427
Target:  5'- gGGCCccgCGCGGGcgGCGGgCUUGUcuuuGGGCGg -3'
miRNA:   3'- gUCGGa--GCGCCU--UGUC-GAACG----CUUGC- -5'
23732 3' -54.9 NC_005261.1 + 1029 0.67 0.900037
Target:  5'- gGGCUuUUGCGGAggGCGGCggGCGGcgGCGu -3'
miRNA:   3'- gUCGG-AGCGCCU--UGUCGaaCGCU--UGC- -5'
23732 3' -54.9 NC_005261.1 + 112329 0.67 0.900037
Target:  5'- uGGCCUCGCGcGACuGCaaGCGGGg- -3'
miRNA:   3'- gUCGGAGCGCcUUGuCGaaCGCUUgc -5'
23732 3' -54.9 NC_005261.1 + 31680 0.67 0.900037
Target:  5'- uGGCCgcggCGCGGcGGCGGCUgaucGUGAuCGa -3'
miRNA:   3'- gUCGGa---GCGCC-UUGUCGAa---CGCUuGC- -5'
23732 3' -54.9 NC_005261.1 + 118162 0.67 0.900037
Target:  5'- uGGCCgUCGCGGcGgGGCUUGCcgucuGGGCc -3'
miRNA:   3'- gUCGG-AGCGCCuUgUCGAACG-----CUUGc -5'
23732 3' -54.9 NC_005261.1 + 97585 0.67 0.900037
Target:  5'- uGGCgCggGCGGAGCgGGCggaGCGGGCGg -3'
miRNA:   3'- gUCG-GagCGCCUUG-UCGaa-CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 82561 0.67 0.900037
Target:  5'- gCGGCCgCGCGccgcAGCAGCUcGCGcAGCGc -3'
miRNA:   3'- -GUCGGaGCGCc---UUGUCGAaCGC-UUGC- -5'
23732 3' -54.9 NC_005261.1 + 134193 0.67 0.893407
Target:  5'- gGGCCUggCGCGGcuCGGCgcGCGGgucGCGg -3'
miRNA:   3'- gUCGGA--GCGCCuuGUCGaaCGCU---UGC- -5'
23732 3' -54.9 NC_005261.1 + 71478 0.67 0.893407
Target:  5'- aGGCCUCcCGGugcGCGGCggccaggUGCGcGCGa -3'
miRNA:   3'- gUCGGAGcGCCu--UGUCGa------ACGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 56418 0.67 0.893407
Target:  5'- -cGCUUCGCGGcGCAcccGCcUGCGGagGCGg -3'
miRNA:   3'- guCGGAGCGCCuUGU---CGaACGCU--UGC- -5'
23732 3' -54.9 NC_005261.1 + 74701 0.67 0.893407
Target:  5'- uGGCCgccgcgcgggCGCGGAaccgggccgcgGCAGCggccGCGGACa -3'
miRNA:   3'- gUCGGa---------GCGCCU-----------UGUCGaa--CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 44857 0.67 0.893407
Target:  5'- gCAGCCgCGaGGAAgAGCgccgccGCGAGCGc -3'
miRNA:   3'- -GUCGGaGCgCCUUgUCGaa----CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 3770 0.67 0.88654
Target:  5'- -cGCCUCGCGGcaggccGCAGCgcaGCGGu-- -3'
miRNA:   3'- guCGGAGCGCCu-----UGUCGaa-CGCUugc -5'
23732 3' -54.9 NC_005261.1 + 19161 0.67 0.88654
Target:  5'- cCAGCCg-GCGGAucacgcgaaGCAGCUgcCGGGCGc -3'
miRNA:   3'- -GUCGGagCGCCU---------UGUCGAacGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 57275 0.67 0.88654
Target:  5'- -cGCaUCGCGcGGCAGCUgcucGCGAGCa -3'
miRNA:   3'- guCGgAGCGCcUUGUCGAa---CGCUUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.