miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 3' -54.9 NC_005261.1 + 44429 0.67 0.88654
Target:  5'- -cGCCgacgaCGUGGAGCGGCUcucgcggcugUGgGAGCa -3'
miRNA:   3'- guCGGa----GCGCCUUGUCGA----------ACgCUUGc -5'
23732 3' -54.9 NC_005261.1 + 57275 0.67 0.88654
Target:  5'- -cGCaUCGCGcGGCAGCUgcucGCGAGCa -3'
miRNA:   3'- guCGgAGCGCcUUGUCGAa---CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 136600 0.67 0.88654
Target:  5'- cCGGCgcagCGUGGAGCGGCgcGCGcGCGc -3'
miRNA:   3'- -GUCGga--GCGCCUUGUCGaaCGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 134362 0.67 0.879441
Target:  5'- -cGCCgCGCGGGggGCGGCgccgcugGCGAcgGCGa -3'
miRNA:   3'- guCGGaGCGCCU--UGUCGaa-----CGCU--UGC- -5'
23732 3' -54.9 NC_005261.1 + 3425 0.67 0.879441
Target:  5'- gAGCg-CGCGGGcCAGCguccagGCGGGCGc -3'
miRNA:   3'- gUCGgaGCGCCUuGUCGaa----CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 136916 0.67 0.879441
Target:  5'- gGGCCgCGCGGccGCGGCgcaUGUGGugGu -3'
miRNA:   3'- gUCGGaGCGCCu-UGUCGa--ACGCUugC- -5'
23732 3' -54.9 NC_005261.1 + 73216 0.67 0.879441
Target:  5'- -cGCCUCGaGGGgcGCGGUggccGCGAGCGc -3'
miRNA:   3'- guCGGAGCgCCU--UGUCGaa--CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 68996 0.67 0.878719
Target:  5'- gGGCCgCGCGGGcgccGCGGCUUcguugGCGAguccgugGCGg -3'
miRNA:   3'- gUCGGaGCGCCU----UGUCGAA-----CGCU-------UGC- -5'
23732 3' -54.9 NC_005261.1 + 62870 0.67 0.872115
Target:  5'- gCGGCCUuuuaugCGCGGcGCAGCccgcGCGAGgCGg -3'
miRNA:   3'- -GUCGGA------GCGCCuUGUCGaa--CGCUU-GC- -5'
23732 3' -54.9 NC_005261.1 + 47879 0.67 0.872115
Target:  5'- gCAGCgUcCGgGGAGCGGCggcgGCGGcGCGa -3'
miRNA:   3'- -GUCGgA-GCgCCUUGUCGaa--CGCU-UGC- -5'
23732 3' -54.9 NC_005261.1 + 86022 0.67 0.872115
Target:  5'- gCAGCCgcuGCuGGucCAGCUcUGCGAGCa -3'
miRNA:   3'- -GUCGGag-CG-CCuuGUCGA-ACGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 93883 0.67 0.872115
Target:  5'- cCAGCUcagcagCGCGGucgcCAGCgacUGCGGGCGc -3'
miRNA:   3'- -GUCGGa-----GCGCCuu--GUCGa--ACGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 111567 0.67 0.872115
Target:  5'- cCGGCCgaCGCGGcagAGCAGCUcgagGcCGAGCa -3'
miRNA:   3'- -GUCGGa-GCGCC---UUGUCGAa---C-GCUUGc -5'
23732 3' -54.9 NC_005261.1 + 135085 0.67 0.864566
Target:  5'- gCGGgCUCGCGGcccGGCGGCggagcGCGAGgCGg -3'
miRNA:   3'- -GUCgGAGCGCC---UUGUCGaa---CGCUU-GC- -5'
23732 3' -54.9 NC_005261.1 + 73265 0.67 0.864566
Target:  5'- --aUCUCGCGGAgGCAGUa-GCGGGCGa -3'
miRNA:   3'- gucGGAGCGCCU-UGUCGaaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 72455 0.67 0.864566
Target:  5'- -cGCC-CGCGGcgagcGCGGCgagcGCGAGCGc -3'
miRNA:   3'- guCGGaGCGCCu----UGUCGaa--CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 72323 0.68 0.856801
Target:  5'- -uGCCcCGCGGcccaaGGCAGUggaugGCGAACGu -3'
miRNA:   3'- guCGGaGCGCC-----UUGUCGaa---CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 43383 0.68 0.856801
Target:  5'- uCGGCCUCGCGGuGCcggcaccguccaGGCgccGgGGGCGg -3'
miRNA:   3'- -GUCGGAGCGCCuUG------------UCGaa-CgCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 48305 0.68 0.856801
Target:  5'- aGGCCUCGgGGGGCgcgucgggcccgGGCUcGgGGGCGc -3'
miRNA:   3'- gUCGGAGCgCCUUG------------UCGAaCgCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 21181 0.68 0.856801
Target:  5'- gCAGCCgcuggCGCGaGcGCGGCc-GCGGACGc -3'
miRNA:   3'- -GUCGGa----GCGC-CuUGUCGaaCGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.