miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 3' -54.9 NC_005261.1 + 43383 0.68 0.856801
Target:  5'- uCGGCCUCGCGGuGCcggcaccguccaGGCgccGgGGGCGg -3'
miRNA:   3'- -GUCGGAGCGCCuUG------------UCGaa-CgCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 48305 0.68 0.856801
Target:  5'- aGGCCUCGgGGGGCgcgucgggcccgGGCUcGgGGGCGc -3'
miRNA:   3'- gUCGGAGCgCCUUG------------UCGAaCgCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 21181 0.68 0.856801
Target:  5'- gCAGCCgcuggCGCGaGcGCGGCc-GCGGACGc -3'
miRNA:   3'- -GUCGGa----GCGC-CuUGUCGaaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 126953 0.68 0.848826
Target:  5'- -cGCCgggCGCgGGGGCGGCagcGCGAACc -3'
miRNA:   3'- guCGGa--GCG-CCUUGUCGaa-CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 20113 0.68 0.848826
Target:  5'- gCGGCaaggcgCGCGGGcccgcaGCGGCUccGCGAGCGc -3'
miRNA:   3'- -GUCGga----GCGCCU------UGUCGAa-CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 11839 0.68 0.848826
Target:  5'- gGGCCcCGCGGGcGCGcGUUcGCGAGCGc -3'
miRNA:   3'- gUCGGaGCGCCU-UGU-CGAaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 71190 0.68 0.840648
Target:  5'- gCAG-CUCGCGGGGCgcggccAGCUgcGCGAugGu -3'
miRNA:   3'- -GUCgGAGCGCCUUG------UCGAa-CGCUugC- -5'
23732 3' -54.9 NC_005261.1 + 351 0.68 0.840648
Target:  5'- gCAGCCcggCGCGGcccGGCGGCgguggcgGCGGugGc -3'
miRNA:   3'- -GUCGGa--GCGCC---UUGUCGaa-----CGCUugC- -5'
23732 3' -54.9 NC_005261.1 + 59465 0.68 0.840648
Target:  5'- gCGGCgUCGgGGGGCAGCgccgGCGcGGCc -3'
miRNA:   3'- -GUCGgAGCgCCUUGUCGaa--CGC-UUGc -5'
23732 3' -54.9 NC_005261.1 + 138022 0.68 0.840648
Target:  5'- gCAGCCcggCGCGGcccGGCGGCgguggcgGCGGugGc -3'
miRNA:   3'- -GUCGGa--GCGCC---UUGUCGaa-----CGCUugC- -5'
23732 3' -54.9 NC_005261.1 + 73582 0.68 0.840648
Target:  5'- gGGCCccccCGCGGcggaGGCGGCggccGCGAGCGc -3'
miRNA:   3'- gUCGGa---GCGCC----UUGUCGaa--CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 125762 0.68 0.838155
Target:  5'- gGGCUgcCGCGGGcuCGGCUaaggccaaggccgcUGCGAACGg -3'
miRNA:   3'- gUCGGa-GCGCCUu-GUCGA--------------ACGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 4428 0.68 0.832273
Target:  5'- aGGCCUCGcCGGAGggcguCAGCa-GCGGGCc -3'
miRNA:   3'- gUCGGAGC-GCCUU-----GUCGaaCGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 35921 0.68 0.832273
Target:  5'- gCGGCCcCGCGccGCAGCccaGCGGGCGc -3'
miRNA:   3'- -GUCGGaGCGCcuUGUCGaa-CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 74067 0.68 0.832273
Target:  5'- gCAGCUgcgcgaCGCGGccCGGCUUGUGcGCGa -3'
miRNA:   3'- -GUCGGa-----GCGCCuuGUCGAACGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 99089 0.68 0.832273
Target:  5'- gGGCggCGCGGcgcgcAGCGGCUUGCucGCGa -3'
miRNA:   3'- gUCGgaGCGCC-----UUGUCGAACGcuUGC- -5'
23732 3' -54.9 NC_005261.1 + 94858 0.68 0.823711
Target:  5'- uCGGCgCUCGCGc-ACGGCccggGCGGGCGg -3'
miRNA:   3'- -GUCG-GAGCGCcuUGUCGaa--CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 92931 0.68 0.823711
Target:  5'- -uGCCg-GCGGAGCAGCUgcccgGCGuccCGg -3'
miRNA:   3'- guCGGagCGCCUUGUCGAa----CGCuu-GC- -5'
23732 3' -54.9 NC_005261.1 + 44032 0.68 0.823711
Target:  5'- gCGGCCgccgCGCGGcGGCcGCggGCGGGCa -3'
miRNA:   3'- -GUCGGa---GCGCC-UUGuCGaaCGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 17574 0.68 0.823711
Target:  5'- uGGCCUUGCGGGcgAGCUgGCaAGCGc -3'
miRNA:   3'- gUCGGAGCGCCUugUCGAaCGcUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.