miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 3' -54.9 NC_005261.1 + 31680 0.67 0.900037
Target:  5'- uGGCCgcggCGCGGcGGCGGCUgaucGUGAuCGa -3'
miRNA:   3'- gUCGGa---GCGCC-UUGUCGAa---CGCUuGC- -5'
23732 3' -54.9 NC_005261.1 + 31851 0.67 0.88654
Target:  5'- uGGCCUCGCGGcGCGuCUU-CGGGCc -3'
miRNA:   3'- gUCGGAGCGCCuUGUcGAAcGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 33582 0.69 0.787748
Target:  5'- cCAGCCcCGCgagcaccaGGGGCGGCgccggcGCGGGCGg -3'
miRNA:   3'- -GUCGGaGCG--------CCUUGUCGaa----CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 33762 0.7 0.739614
Target:  5'- gGGCCcgcUCGCGGGGCccGCg-GCGAGCGc -3'
miRNA:   3'- gUCGG---AGCGCCUUGu-CGaaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 33793 0.66 0.906427
Target:  5'- gGGCCccgCGCGGGcgGCGGgCUUGUcuuuGGGCGg -3'
miRNA:   3'- gUCGGa--GCGCCU--UGUC-GAACG----CUUGC- -5'
23732 3' -54.9 NC_005261.1 + 34717 0.66 0.924134
Target:  5'- gAGCCUCaGCGGu-CGGCgcccccugGCGGccGCGg -3'
miRNA:   3'- gUCGGAG-CGCCuuGUCGaa------CGCU--UGC- -5'
23732 3' -54.9 NC_005261.1 + 34926 0.66 0.929544
Target:  5'- gCGGCCaCGCGGGggGCGGCcgGCGcGACc -3'
miRNA:   3'- -GUCGGaGCGCCU--UGUCGaaCGC-UUGc -5'
23732 3' -54.9 NC_005261.1 + 35921 0.68 0.832273
Target:  5'- gCGGCCcCGCGccGCAGCccaGCGGGCGc -3'
miRNA:   3'- -GUCGGaGCGCcuUGUCGaa-CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 36963 0.66 0.924134
Target:  5'- -cGCCgCGCGGcGCAGagcucggUGCGGGCu -3'
miRNA:   3'- guCGGaGCGCCuUGUCga-----ACGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 37008 0.74 0.524304
Target:  5'- gGGCUgCGCGGGGcCAGUUUGCGGggGCGg -3'
miRNA:   3'- gUCGGaGCGCCUU-GUCGAACGCU--UGC- -5'
23732 3' -54.9 NC_005261.1 + 37229 0.69 0.814969
Target:  5'- gGGCUUgCGCGGcGCGGCgcGUGGACa -3'
miRNA:   3'- gUCGGA-GCGCCuUGUCGaaCGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 38941 0.7 0.719615
Target:  5'- gCGGCCggGCGGGccGCGGCgcGCGGGCu -3'
miRNA:   3'- -GUCGGagCGCCU--UGUCGaaCGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 39885 0.7 0.729658
Target:  5'- aGGCCgcgcgCGCGGcuguGCAGCUggcGCGcGCGg -3'
miRNA:   3'- gUCGGa----GCGCCu---UGUCGAa--CGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 42650 0.69 0.768862
Target:  5'- gCGGCCgCGCGGAAcCAGCcaaGCG-GCGg -3'
miRNA:   3'- -GUCGGaGCGCCUU-GUCGaa-CGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 43383 0.68 0.856801
Target:  5'- uCGGCCUCGCGGuGCcggcaccguccaGGCgccGgGGGCGg -3'
miRNA:   3'- -GUCGGAGCGCCuUG------------UCGaa-CgCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 43769 0.71 0.709494
Target:  5'- aGGUgCUCGUGGGGCGGCgcGCGGAgGg -3'
miRNA:   3'- gUCG-GAGCGCCUUGUCGaaCGCUUgC- -5'
23732 3' -54.9 NC_005261.1 + 44032 0.68 0.823711
Target:  5'- gCGGCCgccgCGCGGcGGCcGCggGCGGGCa -3'
miRNA:   3'- -GUCGGa---GCGCC-UUGuCGaaCGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 44429 0.67 0.88654
Target:  5'- -cGCCgacgaCGUGGAGCGGCUcucgcggcugUGgGAGCa -3'
miRNA:   3'- guCGGa----GCGCCUUGUCGA----------ACgCUUGc -5'
23732 3' -54.9 NC_005261.1 + 44857 0.67 0.893407
Target:  5'- gCAGCCgCGaGGAAgAGCgccgccGCGAGCGc -3'
miRNA:   3'- -GUCGGaGCgCCUUgUCGaa----CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 45639 0.72 0.626871
Target:  5'- gGGCCcgCGcCGGAGCAGUgcccaGCGGGCGu -3'
miRNA:   3'- gUCGGa-GC-GCCUUGUCGaa---CGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.