miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 3' -54.9 NC_005261.1 + 46583 0.69 0.806056
Target:  5'- gCGGCCUCGCGcGAcACGGCcc-CGGGCa -3'
miRNA:   3'- -GUCGGAGCGC-CU-UGUCGaacGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 47879 0.67 0.872115
Target:  5'- gCAGCgUcCGgGGAGCGGCggcgGCGGcGCGa -3'
miRNA:   3'- -GUCGgA-GCgCCUUGUCGaa--CGCU-UGC- -5'
23732 3' -54.9 NC_005261.1 + 48305 0.68 0.856801
Target:  5'- aGGCCUCGgGGGGCgcgucgggcccgGGCUcGgGGGCGc -3'
miRNA:   3'- gUCGGAGCgCCUUG------------UCGAaCgCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 48666 0.65 0.932671
Target:  5'- gAGCCgCGCGGcAACGGCgacuacgggcccGCGGGCc -3'
miRNA:   3'- gUCGGaGCGCC-UUGUCGaa----------CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 50412 0.71 0.709494
Target:  5'- gCAGCCccgcgUCGCGGAGCcGCUcGUGcAGCGu -3'
miRNA:   3'- -GUCGG-----AGCGCCUUGuCGAaCGC-UUGC- -5'
23732 3' -54.9 NC_005261.1 + 55174 0.7 0.739614
Target:  5'- cCGGCggCUCGCGGGGCGGaucgGCGcACGg -3'
miRNA:   3'- -GUCG--GAGCGCCUUGUCgaa-CGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 56418 0.67 0.893407
Target:  5'- -cGCUUCGCGGcGCAcccGCcUGCGGagGCGg -3'
miRNA:   3'- guCGGAGCGCCuUGU---CGaACGCU--UGC- -5'
23732 3' -54.9 NC_005261.1 + 57275 0.67 0.88654
Target:  5'- -cGCaUCGCGcGGCAGCUgcucGCGAGCa -3'
miRNA:   3'- guCGgAGCGCcUUGUCGAa---CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 58112 0.72 0.626871
Target:  5'- cCAGCCgCGC-GAGCAGCcUGcCGAGCGu -3'
miRNA:   3'- -GUCGGaGCGcCUUGUCGaAC-GCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 58340 0.69 0.779317
Target:  5'- -cGCCUCGCGGAGCcGCgccggccaguccaggUGUGcGGCGa -3'
miRNA:   3'- guCGGAGCGCCUUGuCGa--------------ACGC-UUGC- -5'
23732 3' -54.9 NC_005261.1 + 59465 0.68 0.840648
Target:  5'- gCGGCgUCGgGGGGCAGCgccgGCGcGGCc -3'
miRNA:   3'- -GUCGgAGCgCCUUGUCGaa--CGC-UUGc -5'
23732 3' -54.9 NC_005261.1 + 61021 0.66 0.929544
Target:  5'- -cGCCgUCGUGGGGCGGCaccGCGGcaGCu -3'
miRNA:   3'- guCGG-AGCGCCUUGUCGaa-CGCU--UGc -5'
23732 3' -54.9 NC_005261.1 + 62870 0.67 0.872115
Target:  5'- gCGGCCUuuuaugCGCGGcGCAGCccgcGCGAGgCGg -3'
miRNA:   3'- -GUCGGA------GCGCCuUGUCGaa--CGCUU-GC- -5'
23732 3' -54.9 NC_005261.1 + 65536 0.69 0.806056
Target:  5'- gCGGCCgCGCGGGcaGCAGCgcgUGCcaGGCGu -3'
miRNA:   3'- -GUCGGaGCGCCU--UGUCGa--ACGc-UUGC- -5'
23732 3' -54.9 NC_005261.1 + 66480 0.69 0.806056
Target:  5'- -cGuCCUCGCGGuACAGCga--GAGCGg -3'
miRNA:   3'- guC-GGAGCGCCuUGUCGaacgCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 68121 0.69 0.806056
Target:  5'- gAGCUgCGCGGGccGCGGCgcgGCGAccGCGc -3'
miRNA:   3'- gUCGGaGCGCCU--UGUCGaa-CGCU--UGC- -5'
23732 3' -54.9 NC_005261.1 + 68695 0.69 0.803349
Target:  5'- gGGCCggCGCGGAcgacgGCGGCgccggcccucacgcgGCGGGCGc -3'
miRNA:   3'- gUCGGa-GCGCCU-----UGUCGaa-------------CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 68996 0.67 0.878719
Target:  5'- gGGCCgCGCGGGcgccGCGGCUUcguugGCGAguccgugGCGg -3'
miRNA:   3'- gUCGGaGCGCCU----UGUCGAA-----CGCU-------UGC- -5'
23732 3' -54.9 NC_005261.1 + 71190 0.68 0.840648
Target:  5'- gCAG-CUCGCGGGGCgcggccAGCUgcGCGAugGu -3'
miRNA:   3'- -GUCgGAGCGCCUUG------UCGAa-CGCUugC- -5'
23732 3' -54.9 NC_005261.1 + 71478 0.67 0.893407
Target:  5'- aGGCCUCcCGGugcGCGGCggccaggUGCGcGCGa -3'
miRNA:   3'- gUCGGAGcGCCu--UGUCGa------ACGCuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.