Results 61 - 80 of 119 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 71791 | 0.66 | 0.912575 |
Target: 5'- gCAGCUgagCGCGGccCGGCccgUGgGGACGu -3' miRNA: 3'- -GUCGGa--GCGCCuuGUCGa--ACgCUUGC- -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 71963 | 0.66 | 0.918478 |
Target: 5'- uCGGCgCggggCGCGGAGCGcGCggcaggUGCGcAGCGu -3' miRNA: 3'- -GUCG-Ga---GCGCCUUGU-CGa-----ACGC-UUGC- -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 72323 | 0.68 | 0.856801 |
Target: 5'- -uGCCcCGCGGcccaaGGCAGUggaugGCGAACGu -3' miRNA: 3'- guCGGaGCGCC-----UUGUCGaa---CGCUUGC- -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 72455 | 0.67 | 0.864566 |
Target: 5'- -cGCC-CGCGGcgagcGCGGCgagcGCGAGCGc -3' miRNA: 3'- guCGGaGCGCCu----UGUCGaa--CGCUUGC- -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 73216 | 0.67 | 0.879441 |
Target: 5'- -cGCCUCGaGGGgcGCGGUggccGCGAGCGc -3' miRNA: 3'- guCGGAGCgCCU--UGUCGaa--CGCUUGC- -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 73265 | 0.67 | 0.864566 |
Target: 5'- --aUCUCGCGGAgGCAGUa-GCGGGCGa -3' miRNA: 3'- gucGGAGCGCCU-UGUCGaaCGCUUGC- -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 73482 | 0.68 | 0.856801 |
Target: 5'- gGGCC--GCGGcGCGGCgcGCGGACGc -3' miRNA: 3'- gUCGGagCGCCuUGUCGaaCGCUUGC- -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 73582 | 0.68 | 0.840648 |
Target: 5'- gGGCCccccCGCGGcggaGGCGGCggccGCGAGCGc -3' miRNA: 3'- gUCGGa---GCGCC----UUGUCGaa--CGCUUGC- -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 74067 | 0.68 | 0.832273 |
Target: 5'- gCAGCUgcgcgaCGCGGccCGGCUUGUGcGCGa -3' miRNA: 3'- -GUCGGa-----GCGCCuuGUCGAACGCuUGC- -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 74701 | 0.67 | 0.893407 |
Target: 5'- uGGCCgccgcgcgggCGCGGAaccgggccgcgGCAGCggccGCGGACa -3' miRNA: 3'- gUCGGa---------GCGCCU-----------UGUCGaa--CGCUUGc -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 75351 | 0.84 | 0.137744 |
Target: 5'- uCGGCCUCGUGGAGCAGCUgccgGCGuACc -3' miRNA: 3'- -GUCGGAGCGCCUUGUCGAa---CGCuUGc -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 75755 | 0.66 | 0.912575 |
Target: 5'- -cGCCUgcUGUGGAACGGCaacguguacGCGGACa -3' miRNA: 3'- guCGGA--GCGCCUUGUCGaa-------CGCUUGc -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 81342 | 0.73 | 0.575071 |
Target: 5'- gGGCCgUCgGCGGGGCgggGGCUUGCGGGgGg -3' miRNA: 3'- gUCGG-AG-CGCCUUG---UCGAACGCUUgC- -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 82561 | 0.67 | 0.900037 |
Target: 5'- gCGGCCgCGCGccgcAGCAGCUcGCGcAGCGc -3' miRNA: 3'- -GUCGGaGCGCc---UUGUCGAaCGC-UUGC- -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 83299 | 0.68 | 0.856801 |
Target: 5'- aCGGCUgCGCGGGgucguGCAGCU--CGGGCGg -3' miRNA: 3'- -GUCGGaGCGCCU-----UGUCGAacGCUUGC- -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 85303 | 0.72 | 0.626871 |
Target: 5'- gCGGCUUCccguuGgGGAAgAGCUUGCGGugGa -3' miRNA: 3'- -GUCGGAG-----CgCCUUgUCGAACGCUugC- -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 86022 | 0.67 | 0.872115 |
Target: 5'- gCAGCCgcuGCuGGucCAGCUcUGCGAGCa -3' miRNA: 3'- -GUCGGag-CG-CCuuGUCGA-ACGCUUGc -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 88866 | 0.84 | 0.13382 |
Target: 5'- -cGCCUCGCGGGACAGCcucuccgUUGCGGugGu -3' miRNA: 3'- guCGGAGCGCCUUGUCG-------AACGCUugC- -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 90123 | 0.66 | 0.924134 |
Target: 5'- gCGGCC-CGCGGcGAgGGCgaggagggggGCGAugGg -3' miRNA: 3'- -GUCGGaGCGCC-UUgUCGaa--------CGCUugC- -5' |
|||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 92931 | 0.68 | 0.823711 |
Target: 5'- -uGCCg-GCGGAGCAGCUgcccgGCGuccCGg -3' miRNA: 3'- guCGGagCGCCUUGUCGAa----CGCuu-GC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home