miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 3' -54.9 NC_005261.1 + 138022 0.68 0.840648
Target:  5'- gCAGCCcggCGCGGcccGGCGGCgguggcgGCGGugGc -3'
miRNA:   3'- -GUCGGa--GCGCC---UUGUCGaa-----CGCUugC- -5'
23732 3' -54.9 NC_005261.1 + 136916 0.67 0.879441
Target:  5'- gGGCCgCGCGGccGCGGCgcaUGUGGugGu -3'
miRNA:   3'- gUCGGaGCGCCu-UGUCGa--ACGCUugC- -5'
23732 3' -54.9 NC_005261.1 + 136600 0.67 0.88654
Target:  5'- cCGGCgcagCGUGGAGCGGCgcGCGcGCGc -3'
miRNA:   3'- -GUCGga--GCGCCUUGUCGaaCGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 136466 0.69 0.796979
Target:  5'- gCAGCCccagacucgCGCGcGGGCAGCa-GCGAGCa -3'
miRNA:   3'- -GUCGGa--------GCGC-CUUGUCGaaCGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 135085 0.67 0.864566
Target:  5'- gCGGgCUCGCGGcccGGCGGCggagcGCGAGgCGg -3'
miRNA:   3'- -GUCgGAGCGCC---UUGUCGaa---CGCUU-GC- -5'
23732 3' -54.9 NC_005261.1 + 134362 0.67 0.879441
Target:  5'- -cGCCgCGCGGGggGCGGCgccgcugGCGAcgGCGa -3'
miRNA:   3'- guCGGaGCGCCU--UGUCGaa-----CGCU--UGC- -5'
23732 3' -54.9 NC_005261.1 + 134193 0.67 0.893407
Target:  5'- gGGCCUggCGCGGcuCGGCgcGCGGgucGCGg -3'
miRNA:   3'- gUCGGA--GCGCCuuGUCGaaCGCU---UGC- -5'
23732 3' -54.9 NC_005261.1 + 132895 0.66 0.924134
Target:  5'- aAGCCgggcgcCGCGG-GCGGCgc-CGAGCGg -3'
miRNA:   3'- gUCGGa-----GCGCCuUGUCGaacGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 132591 0.66 0.918478
Target:  5'- -cGCC-CGCGGAcgccCGGCccgGCGAGCc -3'
miRNA:   3'- guCGGaGCGCCUu---GUCGaa-CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 131457 0.66 0.912575
Target:  5'- -cGCCUCGCGGGcGCcucccGCcuccGCGAGCGc -3'
miRNA:   3'- guCGGAGCGCCU-UGu----CGaa--CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 128523 0.7 0.719615
Target:  5'- gCAGCCUCcugGCGGcugGAguGCUgcUGCGAACc -3'
miRNA:   3'- -GUCGGAG---CGCC---UUguCGA--ACGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 128064 0.7 0.749473
Target:  5'- gGGCCaUgGCGGGcgGGCggGCGAGCGa -3'
miRNA:   3'- gUCGG-AgCGCCUugUCGaaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 126953 0.68 0.848826
Target:  5'- -cGCCgggCGCgGGGGCGGCagcGCGAACc -3'
miRNA:   3'- guCGGa--GCG-CCUUGUCGaa-CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 125762 0.68 0.838155
Target:  5'- gGGCUgcCGCGGGcuCGGCUaaggccaaggccgcUGCGAACGg -3'
miRNA:   3'- gUCGGa-GCGCCUu-GUCGA--------------ACGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 122902 0.7 0.719615
Target:  5'- -cGCCUC-CGGGACGGCgUUG-GAGCGc -3'
miRNA:   3'- guCGGAGcGCCUUGUCG-AACgCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 121485 0.66 0.912575
Target:  5'- cCGGCUgcCGCcacGGGGCGGCgggGCGGGCa -3'
miRNA:   3'- -GUCGGa-GCG---CCUUGUCGaa-CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 121424 0.66 0.929544
Target:  5'- -cGCCgcCGCuacGGGGCGGCgggGCGGGCa -3'
miRNA:   3'- guCGGa-GCG---CCUUGUCGaa-CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 118717 0.66 0.918478
Target:  5'- uCAGCgUCGCGGGcgggcACGGCgucGCGcuCGc -3'
miRNA:   3'- -GUCGgAGCGCCU-----UGUCGaa-CGCuuGC- -5'
23732 3' -54.9 NC_005261.1 + 118162 0.67 0.900037
Target:  5'- uGGCCgUCGCGGcGgGGCUUGCcgucuGGGCc -3'
miRNA:   3'- gUCGG-AGCGCCuUgUCGAACG-----CUUGc -5'
23732 3' -54.9 NC_005261.1 + 112329 0.67 0.900037
Target:  5'- uGGCCUCGCGcGACuGCaaGCGGGg- -3'
miRNA:   3'- gUCGGAGCGCcUUGuCGaaCGCUUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.