miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 3' -54.9 NC_005261.1 + 111567 0.67 0.872115
Target:  5'- cCGGCCgaCGCGGcagAGCAGCUcgagGcCGAGCa -3'
miRNA:   3'- -GUCGGa-GCGCC---UUGUCGAa---C-GCUUGc -5'
23732 3' -54.9 NC_005261.1 + 110790 0.66 0.912575
Target:  5'- -uGCUcCGgGGGACGGCggGCGAggagGCGg -3'
miRNA:   3'- guCGGaGCgCCUUGUCGaaCGCU----UGC- -5'
23732 3' -54.9 NC_005261.1 + 105267 0.71 0.668428
Target:  5'- aCAGgCUCgGCGGGcgGCAGCgccgGCGAGCc -3'
miRNA:   3'- -GUCgGAG-CGCCU--UGUCGaa--CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 104826 0.71 0.678763
Target:  5'- gCGGCgUCGCGGGGCcGCgccacGCGGACc -3'
miRNA:   3'- -GUCGgAGCGCCUUGuCGaa---CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 104291 0.66 0.916733
Target:  5'- gGGCCUCGCaGGcccgcgcgcgcucaAAgAGCgcGCGGACGc -3'
miRNA:   3'- gUCGGAGCG-CC--------------UUgUCGaaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 104065 0.66 0.918478
Target:  5'- uCGGCCgcgagCGCGuc-CAGCUcgGCGGACa -3'
miRNA:   3'- -GUCGGa----GCGCcuuGUCGAa-CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 103860 0.66 0.929544
Target:  5'- gAGCCgcggcggCgGCGGGGCGGCgccGcCGGGCGg -3'
miRNA:   3'- gUCGGa------G-CGCCUUGUCGaa-C-GCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 103826 0.73 0.554592
Target:  5'- cCAGCagCUCGCGGAGgAGCUcgcccuUGCGcGCGa -3'
miRNA:   3'- -GUCG--GAGCGCCUUgUCGA------ACGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 101744 0.66 0.912575
Target:  5'- gGGCCUCGCucGGCAGCUccagGUGcACGc -3'
miRNA:   3'- gUCGGAGCGccUUGUCGAa---CGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 100900 0.66 0.929544
Target:  5'- gCGGCCUCGCcGcGCAccGCc-GCGAGCGu -3'
miRNA:   3'- -GUCGGAGCGcCuUGU--CGaaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 99782 0.68 0.823711
Target:  5'- gCGGCCcgggucccagUCGCGGcGCGGaugGCGAACa -3'
miRNA:   3'- -GUCGG----------AGCGCCuUGUCgaaCGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 99089 0.68 0.832273
Target:  5'- gGGCggCGCGGcgcgcAGCGGCUUGCucGCGa -3'
miRNA:   3'- gUCGgaGCGCC-----UUGUCGAACGcuUGC- -5'
23732 3' -54.9 NC_005261.1 + 99007 0.66 0.906427
Target:  5'- uCAGCgUCGC-GAGCGGCggcGCGGcgGCGc -3'
miRNA:   3'- -GUCGgAGCGcCUUGUCGaa-CGCU--UGC- -5'
23732 3' -54.9 NC_005261.1 + 98724 0.72 0.647675
Target:  5'- cCGGCCUUGgGGGcacGCGGCcgcGCGGGCGu -3'
miRNA:   3'- -GUCGGAGCgCCU---UGUCGaa-CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 97585 0.67 0.900037
Target:  5'- uGGCgCggGCGGAGCgGGCggaGCGGGCGg -3'
miRNA:   3'- gUCG-GagCGCCUUG-UCGaa-CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 95825 0.73 0.554592
Target:  5'- gCGGuCCUCGCGGc---GCUUGUGGGCGg -3'
miRNA:   3'- -GUC-GGAGCGCCuuguCGAACGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 95608 0.7 0.715575
Target:  5'- cCGGCCggcugcuggaccgCGCGGuccaggAGCGGCUggGCGAGCGc -3'
miRNA:   3'- -GUCGGa------------GCGCC------UUGUCGAa-CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 94858 0.68 0.823711
Target:  5'- uCGGCgCUCGCGc-ACGGCccggGCGGGCGg -3'
miRNA:   3'- -GUCG-GAGCGCcuUGUCGaa--CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 93883 0.67 0.872115
Target:  5'- cCAGCUcagcagCGCGGucgcCAGCgacUGCGGGCGc -3'
miRNA:   3'- -GUCGGa-----GCGCCuu--GUCGa--ACGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 92931 0.68 0.823711
Target:  5'- -uGCCg-GCGGAGCAGCUgcccgGCGuccCGg -3'
miRNA:   3'- guCGGagCGCCUUGUCGAa----CGCuu-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.