miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 3' -54.9 NC_005261.1 + 90123 0.66 0.924134
Target:  5'- gCGGCC-CGCGGcGAgGGCgaggagggggGCGAugGg -3'
miRNA:   3'- -GUCGGaGCGCC-UUgUCGaa--------CGCUugC- -5'
23732 3' -54.9 NC_005261.1 + 88866 0.84 0.13382
Target:  5'- -cGCCUCGCGGGACAGCcucuccgUUGCGGugGu -3'
miRNA:   3'- guCGGAGCGCCUUGUCG-------AACGCUugC- -5'
23732 3' -54.9 NC_005261.1 + 86022 0.67 0.872115
Target:  5'- gCAGCCgcuGCuGGucCAGCUcUGCGAGCa -3'
miRNA:   3'- -GUCGGag-CG-CCuuGUCGA-ACGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 85303 0.72 0.626871
Target:  5'- gCGGCUUCccguuGgGGAAgAGCUUGCGGugGa -3'
miRNA:   3'- -GUCGGAG-----CgCCUUgUCGAACGCUugC- -5'
23732 3' -54.9 NC_005261.1 + 83299 0.68 0.856801
Target:  5'- aCGGCUgCGCGGGgucguGCAGCU--CGGGCGg -3'
miRNA:   3'- -GUCGGaGCGCCU-----UGUCGAacGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 82561 0.67 0.900037
Target:  5'- gCGGCCgCGCGccgcAGCAGCUcGCGcAGCGc -3'
miRNA:   3'- -GUCGGaGCGCc---UUGUCGAaCGC-UUGC- -5'
23732 3' -54.9 NC_005261.1 + 81342 0.73 0.575071
Target:  5'- gGGCCgUCgGCGGGGCgggGGCUUGCGGGgGg -3'
miRNA:   3'- gUCGG-AG-CGCCUUG---UCGAACGCUUgC- -5'
23732 3' -54.9 NC_005261.1 + 75755 0.66 0.912575
Target:  5'- -cGCCUgcUGUGGAACGGCaacguguacGCGGACa -3'
miRNA:   3'- guCGGA--GCGCCUUGUCGaa-------CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 75351 0.84 0.137744
Target:  5'- uCGGCCUCGUGGAGCAGCUgccgGCGuACc -3'
miRNA:   3'- -GUCGGAGCGCCUUGUCGAa---CGCuUGc -5'
23732 3' -54.9 NC_005261.1 + 74701 0.67 0.893407
Target:  5'- uGGCCgccgcgcgggCGCGGAaccgggccgcgGCAGCggccGCGGACa -3'
miRNA:   3'- gUCGGa---------GCGCCU-----------UGUCGaa--CGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 74067 0.68 0.832273
Target:  5'- gCAGCUgcgcgaCGCGGccCGGCUUGUGcGCGa -3'
miRNA:   3'- -GUCGGa-----GCGCCuuGUCGAACGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 73582 0.68 0.840648
Target:  5'- gGGCCccccCGCGGcggaGGCGGCggccGCGAGCGc -3'
miRNA:   3'- gUCGGa---GCGCC----UUGUCGaa--CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 73482 0.68 0.856801
Target:  5'- gGGCC--GCGGcGCGGCgcGCGGACGc -3'
miRNA:   3'- gUCGGagCGCCuUGUCGaaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 73265 0.67 0.864566
Target:  5'- --aUCUCGCGGAgGCAGUa-GCGGGCGa -3'
miRNA:   3'- gucGGAGCGCCU-UGUCGaaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 73216 0.67 0.879441
Target:  5'- -cGCCUCGaGGGgcGCGGUggccGCGAGCGc -3'
miRNA:   3'- guCGGAGCgCCU--UGUCGaa--CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 72455 0.67 0.864566
Target:  5'- -cGCC-CGCGGcgagcGCGGCgagcGCGAGCGc -3'
miRNA:   3'- guCGGaGCGCCu----UGUCGaa--CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 72323 0.68 0.856801
Target:  5'- -uGCCcCGCGGcccaaGGCAGUggaugGCGAACGu -3'
miRNA:   3'- guCGGaGCGCC-----UUGUCGaa---CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 71963 0.66 0.918478
Target:  5'- uCGGCgCggggCGCGGAGCGcGCggcaggUGCGcAGCGu -3'
miRNA:   3'- -GUCG-Ga---GCGCCUUGU-CGa-----ACGC-UUGC- -5'
23732 3' -54.9 NC_005261.1 + 71791 0.66 0.912575
Target:  5'- gCAGCUgagCGCGGccCGGCccgUGgGGACGu -3'
miRNA:   3'- -GUCGGa--GCGCCuuGUCGa--ACgCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 71478 0.67 0.893407
Target:  5'- aGGCCUCcCGGugcGCGGCggccaggUGCGcGCGa -3'
miRNA:   3'- gUCGGAGcGCCu--UGUCGa------ACGCuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.