Results 21 - 40 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23732 | 3' | -54.9 | NC_005261.1 | + | 122902 | 0.7 | 0.719615 |
Target: 5'- -cGCCUC-CGGGACGGCgUUG-GAGCGc -3' miRNA: 3'- guCGGAGcGCCUUGUCG-AACgCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 38941 | 0.7 | 0.719615 |
Target: 5'- gCGGCCggGCGGGccGCGGCgcGCGGGCu -3' miRNA: 3'- -GUCGGagCGCCU--UGUCGaaCGCUUGc -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 45639 | 0.72 | 0.626871 |
Target: 5'- gGGCCcgCGcCGGAGCAGUgcccaGCGGGCGu -3' miRNA: 3'- gUCGGa-GC-GCCUUGUCGaa---CGCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 29899 | 0.72 | 0.606083 |
Target: 5'- gGGCC-CGCGG--CAGCgcGCGAGCGg -3' miRNA: 3'- gUCGGaGCGCCuuGUCGaaCGCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 19025 | 0.73 | 0.585376 |
Target: 5'- uCAGCgUCGCGGGGCAGCcgGaGAGCc -3' miRNA: 3'- -GUCGgAGCGCCUUGUCGaaCgCUUGc -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 81342 | 0.73 | 0.575071 |
Target: 5'- gGGCCgUCgGCGGGGCgggGGCUUGCGGGgGg -3' miRNA: 3'- gUCGG-AG-CGCCUUG---UCGAACGCUUgC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 95825 | 0.73 | 0.554592 |
Target: 5'- gCGGuCCUCGCGGc---GCUUGUGGGCGg -3' miRNA: 3'- -GUC-GGAGCGCCuuguCGAACGCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 103826 | 0.73 | 0.554592 |
Target: 5'- cCAGCagCUCGCGGAGgAGCUcgcccuUGCGcGCGa -3' miRNA: 3'- -GUCG--GAGCGCCUUgUCGA------ACGCuUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 37008 | 0.74 | 0.524304 |
Target: 5'- gGGCUgCGCGGGGcCAGUUUGCGGggGCGg -3' miRNA: 3'- gUCGGaGCGCCUU-GUCGAACGCU--UGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 75351 | 0.84 | 0.137744 |
Target: 5'- uCGGCCUCGUGGAGCAGCUgccgGCGuACc -3' miRNA: 3'- -GUCGGAGCGCCUUGUCGAa---CGCuUGc -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 58112 | 0.72 | 0.626871 |
Target: 5'- cCAGCCgCGC-GAGCAGCcUGcCGAGCGu -3' miRNA: 3'- -GUCGGaGCGcCUUGUCGaAC-GCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 85303 | 0.72 | 0.626871 |
Target: 5'- gCGGCUUCccguuGgGGAAgAGCUUGCGGugGa -3' miRNA: 3'- -GUCGGAG-----CgCCUUgUCGAACGCUugC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 128523 | 0.7 | 0.719615 |
Target: 5'- gCAGCCUCcugGCGGcugGAguGCUgcUGCGAACc -3' miRNA: 3'- -GUCGGAG---CGCC---UUguCGA--ACGCUUGc -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 95608 | 0.7 | 0.715575 |
Target: 5'- cCGGCCggcugcuggaccgCGCGGuccaggAGCGGCUggGCGAGCGc -3' miRNA: 3'- -GUCGGa------------GCGCC------UUGUCGAa-CGCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 50412 | 0.71 | 0.709494 |
Target: 5'- gCAGCCccgcgUCGCGGAGCcGCUcGUGcAGCGu -3' miRNA: 3'- -GUCGG-----AGCGCCUUGuCGAaCGC-UUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 43769 | 0.71 | 0.709494 |
Target: 5'- aGGUgCUCGUGGGGCGGCgcGCGGAgGg -3' miRNA: 3'- gUCG-GAGCGCCUUGUCGaaCGCUUgC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 21819 | 0.71 | 0.689058 |
Target: 5'- gGGCC-CGCGGcgGGCGcGCgUGCGGGCGg -3' miRNA: 3'- gUCGGaGCGCC--UUGU-CGaACGCUUGC- -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 104826 | 0.71 | 0.678763 |
Target: 5'- gCGGCgUCGCGGGGCcGCgccacGCGGACc -3' miRNA: 3'- -GUCGgAGCGCCUUGuCGaa---CGCUUGc -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 105267 | 0.71 | 0.668428 |
Target: 5'- aCAGgCUCgGCGGGcgGCAGCgccgGCGAGCc -3' miRNA: 3'- -GUCgGAG-CGCCU--UGUCGaa--CGCUUGc -5' |
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23732 | 3' | -54.9 | NC_005261.1 | + | 98724 | 0.72 | 0.647675 |
Target: 5'- cCGGCCUUGgGGGcacGCGGCcgcGCGGGCGu -3' miRNA: 3'- -GUCGGAGCgCCU---UGUCGaa-CGCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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