miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 3' -54.9 NC_005261.1 + 81342 0.73 0.575071
Target:  5'- gGGCCgUCgGCGGGGCgggGGCUUGCGGGgGg -3'
miRNA:   3'- gUCGG-AG-CGCCUUG---UCGAACGCUUgC- -5'
23732 3' -54.9 NC_005261.1 + 95825 0.73 0.554592
Target:  5'- gCGGuCCUCGCGGc---GCUUGUGGGCGg -3'
miRNA:   3'- -GUC-GGAGCGCCuuguCGAACGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 103826 0.73 0.554592
Target:  5'- cCAGCagCUCGCGGAGgAGCUcgcccuUGCGcGCGa -3'
miRNA:   3'- -GUCG--GAGCGCCUUgUCGA------ACGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 37008 0.74 0.524304
Target:  5'- gGGCUgCGCGGGGcCAGUUUGCGGggGCGg -3'
miRNA:   3'- gUCGGaGCGCCUU-GUCGAACGCU--UGC- -5'
23732 3' -54.9 NC_005261.1 + 75351 0.84 0.137744
Target:  5'- uCGGCCUCGUGGAGCAGCUgccgGCGuACc -3'
miRNA:   3'- -GUCGGAGCGCCUUGUCGAa---CGCuUGc -5'
23732 3' -54.9 NC_005261.1 + 21819 0.71 0.689058
Target:  5'- gGGCC-CGCGGcgGGCGcGCgUGCGGGCGg -3'
miRNA:   3'- gUCGGaGCGCC--UUGU-CGaACGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 43769 0.71 0.709494
Target:  5'- aGGUgCUCGUGGGGCGGCgcGCGGAgGg -3'
miRNA:   3'- gUCG-GAGCGCCUUGUCGaaCGCUUgC- -5'
23732 3' -54.9 NC_005261.1 + 14877 0.69 0.768862
Target:  5'- -cGCCaUCGCGGcGCAGagcGCGAGCa -3'
miRNA:   3'- guCGG-AGCGCCuUGUCgaaCGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 42650 0.69 0.768862
Target:  5'- gCGGCCgCGCGGAAcCAGCcaaGCG-GCGg -3'
miRNA:   3'- -GUCGGaGCGCCUU-GUCGaa-CGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 128064 0.7 0.749473
Target:  5'- gGGCCaUgGCGGGcgGGCggGCGAGCGa -3'
miRNA:   3'- gUCGG-AgCGCCUugUCGaaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 55174 0.7 0.739614
Target:  5'- cCGGCggCUCGCGGGGCGGaucgGCGcACGg -3'
miRNA:   3'- -GUCG--GAGCGCCUUGUCgaa-CGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 33762 0.7 0.739614
Target:  5'- gGGCCcgcUCGCGGGGCccGCg-GCGAGCGc -3'
miRNA:   3'- gUCGG---AGCGCCUUGu-CGaaCGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 22739 0.7 0.739614
Target:  5'- cCAGUCgggCGCGGGGCGGCg-GCGGcccACGc -3'
miRNA:   3'- -GUCGGa--GCGCCUUGUCGaaCGCU---UGC- -5'
23732 3' -54.9 NC_005261.1 + 39885 0.7 0.729658
Target:  5'- aGGCCgcgcgCGCGGcuguGCAGCUggcGCGcGCGg -3'
miRNA:   3'- gUCGGa----GCGCCu---UGUCGAa--CGCuUGC- -5'
23732 3' -54.9 NC_005261.1 + 31202 0.7 0.719615
Target:  5'- -cGCCccgaggUCGCGGcGCGGCUcGCGGACc -3'
miRNA:   3'- guCGG------AGCGCCuUGUCGAaCGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 122902 0.7 0.719615
Target:  5'- -cGCCUC-CGGGACGGCgUUG-GAGCGc -3'
miRNA:   3'- guCGGAGcGCCUUGUCG-AACgCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 38941 0.7 0.719615
Target:  5'- gCGGCCggGCGGGccGCGGCgcGCGGGCu -3'
miRNA:   3'- -GUCGGagCGCCU--UGUCGaaCGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 128523 0.7 0.719615
Target:  5'- gCAGCCUCcugGCGGcugGAguGCUgcUGCGAACc -3'
miRNA:   3'- -GUCGGAG---CGCC---UUguCGA--ACGCUUGc -5'
23732 3' -54.9 NC_005261.1 + 95608 0.7 0.715575
Target:  5'- cCGGCCggcugcuggaccgCGCGGuccaggAGCGGCUggGCGAGCGc -3'
miRNA:   3'- -GUCGGa------------GCGCC------UUGUCGAa-CGCUUGC- -5'
23732 3' -54.9 NC_005261.1 + 50412 0.71 0.709494
Target:  5'- gCAGCCccgcgUCGCGGAGCcGCUcGUGcAGCGu -3'
miRNA:   3'- -GUCGG-----AGCGCCUUGuCGAaCGC-UUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.