miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 5' -63.4 NC_005261.1 + 87503 0.66 0.567819
Target:  5'- uGGCGcGCaggCGCUCgCCGCCGuGGaAGa- -3'
miRNA:   3'- -CCGC-CG---GCGAGgGGCGGCuCCaUCaa -5'
23732 5' -63.4 NC_005261.1 + 91172 0.66 0.567819
Target:  5'- gGGCGGCaGCU-CCCGCCGGGc----- -3'
miRNA:   3'- -CCGCCGgCGAgGGGCGGCUCcaucaa -5'
23732 5' -63.4 NC_005261.1 + 116836 0.66 0.567819
Target:  5'- cGUGGCCG-UCCCCGCCGc-GaAGUUc -3'
miRNA:   3'- cCGCCGGCgAGGGGCGGCucCaUCAA- -5'
23732 5' -63.4 NC_005261.1 + 70537 0.66 0.558142
Target:  5'- cGGCGGCgccCGCgccccaCCCGCCGcAGGgcGc- -3'
miRNA:   3'- -CCGCCG---GCGag----GGGCGGC-UCCauCaa -5'
23732 5' -63.4 NC_005261.1 + 77337 0.66 0.548513
Target:  5'- cGGC-GCCGCcCCCCGCCauGAGcGcAGUg -3'
miRNA:   3'- -CCGcCGGCGaGGGGCGG--CUC-CaUCAa -5'
23732 5' -63.4 NC_005261.1 + 28848 0.66 0.548513
Target:  5'- aGGCGGCCGUcguggCCgCCGCCcuuGAGGc---- -3'
miRNA:   3'- -CCGCCGGCGa----GG-GGCGG---CUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 4837 0.66 0.548513
Target:  5'- aGGCGGCgGCgUCCgCGCCGcagccucaAGGgcGg- -3'
miRNA:   3'- -CCGCCGgCG-AGGgGCGGC--------UCCauCaa -5'
23732 5' -63.4 NC_005261.1 + 16313 0.66 0.548513
Target:  5'- cGGCGGCCGggccCUCCCCcucGCCGccGGUc--- -3'
miRNA:   3'- -CCGCCGGC----GAGGGG---CGGCu-CCAucaa -5'
23732 5' -63.4 NC_005261.1 + 136614 0.66 0.548513
Target:  5'- aGCGGCgCGCg-CgCGCCGAGGgcGg- -3'
miRNA:   3'- cCGCCG-GCGagGgGCGGCUCCauCaa -5'
23732 5' -63.4 NC_005261.1 + 119846 0.66 0.54276
Target:  5'- cGGCaGCCugccccugaccgugcGCUCCCUgaccgccgcaGCCGAGGgcGUg -3'
miRNA:   3'- -CCGcCGG---------------CGAGGGG----------CGGCUCCauCAa -5'
23732 5' -63.4 NC_005261.1 + 74962 0.66 0.538936
Target:  5'- cGGCgcgcucgaGGCCGCgcgCCCgCGCCG-GGUGc-- -3'
miRNA:   3'- -CCG--------CCGGCGa--GGG-GCGGCuCCAUcaa -5'
23732 5' -63.4 NC_005261.1 + 66324 0.66 0.538936
Target:  5'- aGGCGGCCGUgcagCCCa--CGAGGUc--- -3'
miRNA:   3'- -CCGCCGGCGa---GGGgcgGCUCCAucaa -5'
23732 5' -63.4 NC_005261.1 + 130693 0.66 0.538936
Target:  5'- cGCGuGCUGCUcgagcaCCUCGCCGAGGa---- -3'
miRNA:   3'- cCGC-CGGCGA------GGGGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 42270 0.66 0.538936
Target:  5'- aGGCGGCCGCgCCCagcaGCCGccGcgAGa- -3'
miRNA:   3'- -CCGCCGGCGaGGGg---CGGCucCa-UCaa -5'
23732 5' -63.4 NC_005261.1 + 72775 0.66 0.538936
Target:  5'- cGGCGGCCGCgcaCgCGuCCGGGGc---- -3'
miRNA:   3'- -CCGCCGGCGag-GgGC-GGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 129326 0.66 0.538936
Target:  5'- uGGC-GCCGCgucgccgaCCUCGCCGcGGUAGc- -3'
miRNA:   3'- -CCGcCGGCGa-------GGGGCGGCuCCAUCaa -5'
23732 5' -63.4 NC_005261.1 + 98329 0.66 0.536074
Target:  5'- aGCGGCgGCgcgCCCCgugucgacgcggggGCgGGGGUGGg- -3'
miRNA:   3'- cCGCCGgCGa--GGGG--------------CGgCUCCAUCaa -5'
23732 5' -63.4 NC_005261.1 + 46302 0.66 0.529418
Target:  5'- cGGCGcGCCGCaguagCCCCG-CGAGGc---- -3'
miRNA:   3'- -CCGC-CGGCGa----GGGGCgGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 88570 0.66 0.529418
Target:  5'- cGGCGacgcgucCCGCUUCgCCGCCGAGGc---- -3'
miRNA:   3'- -CCGCc------GGCGAGG-GGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 30550 0.66 0.529418
Target:  5'- aGGaagaGGCCGC-CgCCGCCGGGGc---- -3'
miRNA:   3'- -CCg---CCGGCGaGgGGCGGCUCCaucaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.