miRNA display CGI


Results 21 - 40 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 5' -63.4 NC_005261.1 + 87503 0.66 0.567819
Target:  5'- uGGCGcGCaggCGCUCgCCGCCGuGGaAGa- -3'
miRNA:   3'- -CCGC-CG---GCGAGgGGCGGCuCCaUCaa -5'
23732 5' -63.4 NC_005261.1 + 77337 0.66 0.548513
Target:  5'- cGGC-GCCGCcCCCCGCCauGAGcGcAGUg -3'
miRNA:   3'- -CCGcCGGCGaGGGGCGG--CUC-CaUCAa -5'
23732 5' -63.4 NC_005261.1 + 52696 0.66 0.519961
Target:  5'- gGGCGcGCCGCUgCCgGCCGAuGaaAGUg -3'
miRNA:   3'- -CCGC-CGGCGAgGGgCGGCU-CcaUCAa -5'
23732 5' -63.4 NC_005261.1 + 74365 0.66 0.519961
Target:  5'- gGGCGGCCGCguccgcCCCCGCCc-------- -3'
miRNA:   3'- -CCGCCGGCGa-----GGGGCGGcuccaucaa -5'
23732 5' -63.4 NC_005261.1 + 16313 0.66 0.548513
Target:  5'- cGGCGGCCGggccCUCCCCcucGCCGccGGUc--- -3'
miRNA:   3'- -CCGCCGGC----GAGGGG---CGGCu-CCAucaa -5'
23732 5' -63.4 NC_005261.1 + 74962 0.66 0.538936
Target:  5'- cGGCgcgcucgaGGCCGCgcgCCCgCGCCG-GGUGc-- -3'
miRNA:   3'- -CCG--------CCGGCGa--GGG-GCGGCuCCAUcaa -5'
23732 5' -63.4 NC_005261.1 + 130693 0.66 0.538936
Target:  5'- cGCGuGCUGCUcgagcaCCUCGCCGAGGa---- -3'
miRNA:   3'- cCGC-CGGCGA------GGGGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 28848 0.66 0.548513
Target:  5'- aGGCGGCCGUcguggCCgCCGCCcuuGAGGc---- -3'
miRNA:   3'- -CCGCCGGCGa----GG-GGCGG---CUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 39542 0.67 0.482849
Target:  5'- cGCGGCCGCcagCCCCGCgCGcgcgcGGcGGUc -3'
miRNA:   3'- cCGCCGGCGa--GGGGCG-GCu----CCaUCAa -5'
23732 5' -63.4 NC_005261.1 + 19791 0.67 0.473769
Target:  5'- cGCGGCC-CUCCgaGCCGGGGg---- -3'
miRNA:   3'- cCGCCGGcGAGGggCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 115842 0.67 0.492012
Target:  5'- gGGCgcguuGGcCCGCgcggcCCCCGCCGAGGc---- -3'
miRNA:   3'- -CCG-----CC-GGCGa----GGGGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 103967 0.67 0.491092
Target:  5'- cGGCGGCCGCcacacggaagcgcUCgCCGCCGccgcGGUcggccAGUa -3'
miRNA:   3'- -CCGCCGGCG-------------AGgGGCGGCu---CCA-----UCAa -5'
23732 5' -63.4 NC_005261.1 + 32247 0.67 0.492012
Target:  5'- cGCGGCCGCgcugcuggagCCgCaCGCCGAGGcgccgccgcUGGUg -3'
miRNA:   3'- cCGCCGGCGa---------GG-G-GCGGCUCC---------AUCAa -5'
23732 5' -63.4 NC_005261.1 + 53367 0.67 0.492012
Target:  5'- cGGCcGCCGC-CCCgGCCGcGGUGu-- -3'
miRNA:   3'- -CCGcCGGCGaGGGgCGGCuCCAUcaa -5'
23732 5' -63.4 NC_005261.1 + 37360 0.67 0.510572
Target:  5'- gGGCGG-UGCUCgCCGCCcGAGGcGGc- -3'
miRNA:   3'- -CCGCCgGCGAGgGGCGG-CUCCaUCaa -5'
23732 5' -63.4 NC_005261.1 + 81912 0.67 0.492012
Target:  5'- cGCGGCCaGCUCCUCcUUGAGGUGc-- -3'
miRNA:   3'- cCGCCGG-CGAGGGGcGGCUCCAUcaa -5'
23732 5' -63.4 NC_005261.1 + 103454 0.67 0.510572
Target:  5'- cGGuCGGCCGCcgCgCCCGUCGccAGGgcGUc -3'
miRNA:   3'- -CC-GCCGGCGa-G-GGGCGGC--UCCauCAa -5'
23732 5' -63.4 NC_005261.1 + 67489 0.67 0.510572
Target:  5'- cGCGGCCGC-CgCCaGCCGcGcGUAGUa -3'
miRNA:   3'- cCGCCGGCGaGgGG-CGGCuC-CAUCAa -5'
23732 5' -63.4 NC_005261.1 + 132037 0.67 0.501254
Target:  5'- cGUGGCCGCccuggaCCCCGggGAGGUGGc- -3'
miRNA:   3'- cCGCCGGCGa-----GGGGCggCUCCAUCaa -5'
23732 5' -63.4 NC_005261.1 + 99862 0.67 0.510572
Target:  5'- cGGCcGCCGCgcgCCgCCGCCgcucggcgcGAGGgcGUUg -3'
miRNA:   3'- -CCGcCGGCGa--GG-GGCGG---------CUCCauCAA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.