miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 5' -63.4 NC_005261.1 + 67489 0.67 0.510572
Target:  5'- cGCGGCCGC-CgCCaGCCGcGcGUAGUa -3'
miRNA:   3'- cCGCCGGCGaGgGG-CGGCuC-CAUCAa -5'
23732 5' -63.4 NC_005261.1 + 103454 0.67 0.510572
Target:  5'- cGGuCGGCCGCcgCgCCCGUCGccAGGgcGUc -3'
miRNA:   3'- -CC-GCCGGCGa-G-GGGCGGC--UCCauCAa -5'
23732 5' -63.4 NC_005261.1 + 103967 0.67 0.491092
Target:  5'- cGGCGGCCGCcacacggaagcgcUCgCCGCCGccgcGGUcggccAGUa -3'
miRNA:   3'- -CCGCCGGCG-------------AGgGGCGGCu---CCA-----UCAa -5'
23732 5' -63.4 NC_005261.1 + 39542 0.67 0.482849
Target:  5'- cGCGGCCGCcagCCCCGCgCGcgcgcGGcGGUc -3'
miRNA:   3'- cCGCCGGCGa--GGGGCG-GCu----CCaUCAa -5'
23732 5' -63.4 NC_005261.1 + 37302 0.67 0.482849
Target:  5'- cGCGGaUCGCcCCCCGCaCGAGGa---- -3'
miRNA:   3'- cCGCC-GGCGaGGGGCG-GCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 115452 0.67 0.455872
Target:  5'- cGCGGCCGgaCUCCuCCGCCucGGUGu-- -3'
miRNA:   3'- cCGCCGGC--GAGG-GGCGGcuCCAUcaa -5'
23732 5' -63.4 NC_005261.1 + 116072 0.67 0.454987
Target:  5'- uGGCGcGCCGgUCCCCGuggaugccgcgguCCGcgacgaagaucGGGUAGUa -3'
miRNA:   3'- -CCGC-CGGCgAGGGGC-------------GGC-----------UCCAUCAa -5'
23732 5' -63.4 NC_005261.1 + 107730 0.67 0.455872
Target:  5'- aGGCGGCUGCgCCUCGgCCGcGGgggGGg- -3'
miRNA:   3'- -CCGCCGGCGaGGGGC-GGCuCCa--UCaa -5'
23732 5' -63.4 NC_005261.1 + 118582 0.67 0.455872
Target:  5'- cGGCGGCgCGCgCCgCCGCCGcGG-AGc- -3'
miRNA:   3'- -CCGCCG-GCGaGG-GGCGGCuCCaUCaa -5'
23732 5' -63.4 NC_005261.1 + 63009 0.67 0.464776
Target:  5'- cGGCGGCCGCg-CCCGCgCGGGc----- -3'
miRNA:   3'- -CCGCCGGCGagGGGCG-GCUCcaucaa -5'
23732 5' -63.4 NC_005261.1 + 114997 0.67 0.473769
Target:  5'- cGGCcGCCGCggccccggCCCCGCgGAGGccucgucccaaUAGUc -3'
miRNA:   3'- -CCGcCGGCGa-------GGGGCGgCUCC-----------AUCAa -5'
23732 5' -63.4 NC_005261.1 + 124760 0.67 0.473769
Target:  5'- aGCGGCCGcCUCCagGCUGAGGagcgGGg- -3'
miRNA:   3'- cCGCCGGC-GAGGggCGGCUCCa---UCaa -5'
23732 5' -63.4 NC_005261.1 + 19791 0.67 0.473769
Target:  5'- cGCGGCC-CUCCgaGCCGGGGg---- -3'
miRNA:   3'- cCGCCGGcGAGGggCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 98476 0.68 0.429728
Target:  5'- gGGCGGCCGUcCUCCGCgGGcucGGgcgGGUa -3'
miRNA:   3'- -CCGCCGGCGaGGGGCGgCU---CCa--UCAa -5'
23732 5' -63.4 NC_005261.1 + 98569 0.68 0.429728
Target:  5'- gGGCGGCCGUcCUCCGCgGGcucGGgcgAGUa -3'
miRNA:   3'- -CCGCCGGCGaGGGGCGgCU---CCa--UCAa -5'
23732 5' -63.4 NC_005261.1 + 16240 0.68 0.438346
Target:  5'- gGGCGGUCGacgUCCgCGCCGGGGc---- -3'
miRNA:   3'- -CCGCCGGCg--AGGgGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 101548 0.68 0.438346
Target:  5'- -uCGGCCGCcacgaCCUCGCCGAGGa---- -3'
miRNA:   3'- ccGCCGGCGa----GGGGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 116172 0.68 0.438346
Target:  5'- cGCGGCCGCgUCCCCgacGCCGcuGGgcGc- -3'
miRNA:   3'- cCGCCGGCG-AGGGG---CGGCu-CCauCaa -5'
23732 5' -63.4 NC_005261.1 + 62868 0.68 0.446185
Target:  5'- cGGCGGCCuuuuaugcgcggcGCagCCCGCgCGAGGcGGg- -3'
miRNA:   3'- -CCGCCGG-------------CGagGGGCG-GCUCCaUCaa -5'
23732 5' -63.4 NC_005261.1 + 30874 0.68 0.438346
Target:  5'- aGGgGGCCGCcggCCCUGCCGcccgagcucGGGcUGGg- -3'
miRNA:   3'- -CCgCCGGCGa--GGGGCGGC---------UCC-AUCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.