miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 5' -63.4 NC_005261.1 + 72877 0.76 0.130431
Target:  5'- gGGCaGGuCCGCcCCgCCGCCGGGGUAGa- -3'
miRNA:   3'- -CCG-CC-GGCGaGG-GGCGGCUCCAUCaa -5'
23732 5' -63.4 NC_005261.1 + 83843 0.74 0.17953
Target:  5'- uGGCgGGCCGCggCCCCGCUGGGcUGGg- -3'
miRNA:   3'- -CCG-CCGGCGa-GGGGCGGCUCcAUCaa -5'
23732 5' -63.4 NC_005261.1 + 127293 0.74 0.188403
Target:  5'- gGGCaGCC-CUCCCCGCCGGcuggcGGUGGg- -3'
miRNA:   3'- -CCGcCGGcGAGGGGCGGCU-----CCAUCaa -5'
23732 5' -63.4 NC_005261.1 + 89291 0.73 0.22784
Target:  5'- cGGCGGCCGC-CaaCGCCGAGGa---- -3'
miRNA:   3'- -CCGCCGGCGaGggGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 43284 0.72 0.233233
Target:  5'- cGCGGCCGCcuUUCCCGCgGGGGgcGc- -3'
miRNA:   3'- cCGCCGGCG--AGGGGCGgCUCCauCaa -5'
23732 5' -63.4 NC_005261.1 + 117168 0.72 0.233233
Target:  5'- aGGCGGUCGCcaaggaCCCCGgCGGGGcGGUg -3'
miRNA:   3'- -CCGCCGGCGa-----GGGGCgGCUCCaUCAa -5'
23732 5' -63.4 NC_005261.1 + 83601 0.72 0.233233
Target:  5'- aGCGcGUCGCUCUCCGCCGcGGcGUGGUc -3'
miRNA:   3'- cCGC-CGGCGAGGGGCGGC-UC-CAUCAa -5'
23732 5' -63.4 NC_005261.1 + 127684 0.72 0.238734
Target:  5'- cGGCGGCCGCUgCCCCggcggcGCCgGAGG-AGc- -3'
miRNA:   3'- -CCGCCGGCGA-GGGG------CGG-CUCCaUCaa -5'
23732 5' -63.4 NC_005261.1 + 24925 0.71 0.27404
Target:  5'- cGGCGGCUGCag-CCGCCGAGGggcAGg- -3'
miRNA:   3'- -CCGCCGGCGaggGGCGGCUCCa--UCaa -5'
23732 5' -63.4 NC_005261.1 + 35677 0.71 0.280315
Target:  5'- -cCGGCCGCacCCCCGCCGGcgagccccGGUGGg- -3'
miRNA:   3'- ccGCCGGCGa-GGGGCGGCU--------CCAUCaa -5'
23732 5' -63.4 NC_005261.1 + 8795 0.71 0.286705
Target:  5'- cGGCGGCUGCag-CCGCCGAGGg---- -3'
miRNA:   3'- -CCGCCGGCGaggGGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 4408 0.71 0.299826
Target:  5'- cGGCGGCgCGCUgccgggccaggCCUCGCCgGAGGgcGUc -3'
miRNA:   3'- -CCGCCG-GCGA-----------GGGGCGG-CUCCauCAa -5'
23732 5' -63.4 NC_005261.1 + 35719 0.7 0.313408
Target:  5'- cGGUGGCgGC-CCCgGCCGAGGccaccUGGg- -3'
miRNA:   3'- -CCGCCGgCGaGGGgCGGCUCC-----AUCaa -5'
23732 5' -63.4 NC_005261.1 + 63759 0.7 0.32745
Target:  5'- aGGCcGCCGUguagCCCaCGCCGAGGUc--- -3'
miRNA:   3'- -CCGcCGGCGa---GGG-GCGGCUCCAucaa -5'
23732 5' -63.4 NC_005261.1 + 4914 0.7 0.32745
Target:  5'- cGGCGGCUGC-CUCCGCCGcGGc---- -3'
miRNA:   3'- -CCGCCGGCGaGGGGCGGCuCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 131228 0.7 0.335369
Target:  5'- cGUGGCCGCgcgcaucgaggcugaCCUCGCCGAGGUc--- -3'
miRNA:   3'- cCGCCGGCGa--------------GGGGCGGCUCCAucaa -5'
23732 5' -63.4 NC_005261.1 + 95744 0.7 0.341952
Target:  5'- cGGC-GCCGCcgCCgCCGCCGGGGgcGc- -3'
miRNA:   3'- -CCGcCGGCGa-GG-GGCGGCUCCauCaa -5'
23732 5' -63.4 NC_005261.1 + 35988 0.7 0.341952
Target:  5'- cGGCGGCgGCUCCUgGCgGcGGUAa-- -3'
miRNA:   3'- -CCGCCGgCGAGGGgCGgCuCCAUcaa -5'
23732 5' -63.4 NC_005261.1 + 28595 0.7 0.341952
Target:  5'- cGGCgGGCCGC-CCgCGCCGAGcUGGc- -3'
miRNA:   3'- -CCG-CCGGCGaGGgGCGGCUCcAUCaa -5'
23732 5' -63.4 NC_005261.1 + 11927 0.7 0.349376
Target:  5'- cGGCGGCUGCggcggCCCgCGCCGcGGcGGc- -3'
miRNA:   3'- -CCGCCGGCGa----GGG-GCGGCuCCaUCaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.