miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 5' -63.4 NC_005261.1 + 64518 0.7 0.349376
Target:  5'- cGCgGGCgGCUCCUCGUCGGGGggcaGGUc -3'
miRNA:   3'- cCG-CCGgCGAGGGGCGGCUCCa---UCAa -5'
23732 5' -63.4 NC_005261.1 + 38626 0.69 0.364564
Target:  5'- cGCGGCCGagcCCgCCGCCGAcGGUgacGGUg -3'
miRNA:   3'- cCGCCGGCga-GG-GGCGGCU-CCA---UCAa -5'
23732 5' -63.4 NC_005261.1 + 119537 0.69 0.372328
Target:  5'- cGCGGCCGagcaaggCCCCGCCGcGGGgccgcaAGUg -3'
miRNA:   3'- cCGCCGGCga-----GGGGCGGC-UCCa-----UCAa -5'
23732 5' -63.4 NC_005261.1 + 641 0.69 0.380203
Target:  5'- cGGCGGCCGCcagcgccgcgUCCCCggcGCCGAGuccUGGc- -3'
miRNA:   3'- -CCGCCGGCG----------AGGGG---CGGCUCc--AUCaa -5'
23732 5' -63.4 NC_005261.1 + 123237 0.69 0.387385
Target:  5'- aGCGGCCGCccaggcgcgggCCCCGCCcaucgcccgugacGAGGUgcgGGUg -3'
miRNA:   3'- cCGCCGGCGa----------GGGGCGG-------------CUCCA---UCAa -5'
23732 5' -63.4 NC_005261.1 + 2659 0.69 0.388189
Target:  5'- aGCGGCgGCUCCCgccgCGCUGGGGa---- -3'
miRNA:   3'- cCGCCGgCGAGGG----GCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 37546 0.69 0.396284
Target:  5'- cGCGcGCCGCUCCcgCCGCCGccaccgGGGUGcGUc -3'
miRNA:   3'- cCGC-CGGCGAGG--GGCGGC------UCCAU-CAa -5'
23732 5' -63.4 NC_005261.1 + 92362 0.68 0.429728
Target:  5'- aGGCggGGCagcaGCUCCCaauGCCcAGGUAGUa -3'
miRNA:   3'- -CCG--CCGg---CGAGGGg--CGGcUCCAUCAa -5'
23732 5' -63.4 NC_005261.1 + 98476 0.68 0.429728
Target:  5'- gGGCGGCCGUcCUCCGCgGGcucGGgcgGGUa -3'
miRNA:   3'- -CCGCCGGCGaGGGGCGgCU---CCa--UCAa -5'
23732 5' -63.4 NC_005261.1 + 98569 0.68 0.429728
Target:  5'- gGGCGGCCGUcCUCCGCgGGcucGGgcgAGUa -3'
miRNA:   3'- -CCGCCGGCGaGGGGCGgCU---CCa--UCAa -5'
23732 5' -63.4 NC_005261.1 + 116172 0.68 0.438346
Target:  5'- cGCGGCCGCgUCCCCgacGCCGcuGGgcGc- -3'
miRNA:   3'- cCGCCGGCG-AGGGG---CGGCu-CCauCaa -5'
23732 5' -63.4 NC_005261.1 + 101548 0.68 0.438346
Target:  5'- -uCGGCCGCcacgaCCUCGCCGAGGa---- -3'
miRNA:   3'- ccGCCGGCGa----GGGGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 16240 0.68 0.438346
Target:  5'- gGGCGGUCGacgUCCgCGCCGGGGc---- -3'
miRNA:   3'- -CCGCCGGCg--AGGgGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 30874 0.68 0.438346
Target:  5'- aGGgGGCCGCcggCCCUGCCGcccgagcucGGGcUGGg- -3'
miRNA:   3'- -CCgCCGGCGa--GGGGCGGC---------UCC-AUCaa -5'
23732 5' -63.4 NC_005261.1 + 62868 0.68 0.446185
Target:  5'- cGGCGGCCuuuuaugcgcggcGCagCCCGCgCGAGGcGGg- -3'
miRNA:   3'- -CCGCCGG-------------CGagGGGCG-GCUCCaUCaa -5'
23732 5' -63.4 NC_005261.1 + 116072 0.67 0.454987
Target:  5'- uGGCGcGCCGgUCCCCGuggaugccgcgguCCGcgacgaagaucGGGUAGUa -3'
miRNA:   3'- -CCGC-CGGCgAGGGGC-------------GGC-----------UCCAUCAa -5'
23732 5' -63.4 NC_005261.1 + 107730 0.67 0.455872
Target:  5'- aGGCGGCUGCgCCUCGgCCGcGGgggGGg- -3'
miRNA:   3'- -CCGCCGGCGaGGGGC-GGCuCCa--UCaa -5'
23732 5' -63.4 NC_005261.1 + 115452 0.67 0.455872
Target:  5'- cGCGGCCGgaCUCCuCCGCCucGGUGu-- -3'
miRNA:   3'- cCGCCGGC--GAGG-GGCGGcuCCAUcaa -5'
23732 5' -63.4 NC_005261.1 + 118582 0.67 0.455872
Target:  5'- cGGCGGCgCGCgCCgCCGCCGcGG-AGc- -3'
miRNA:   3'- -CCGCCG-GCGaGG-GGCGGCuCCaUCaa -5'
23732 5' -63.4 NC_005261.1 + 63009 0.67 0.464776
Target:  5'- cGGCGGCCGCg-CCCGCgCGGGc----- -3'
miRNA:   3'- -CCGCCGGCGagGGGCG-GCUCcaucaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.