miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 5' -63.4 NC_005261.1 + 114997 0.67 0.473769
Target:  5'- cGGCcGCCGCggccccggCCCCGCgGAGGccucgucccaaUAGUc -3'
miRNA:   3'- -CCGcCGGCGa-------GGGGCGgCUCC-----------AUCAa -5'
23732 5' -63.4 NC_005261.1 + 124760 0.67 0.473769
Target:  5'- aGCGGCCGcCUCCagGCUGAGGagcgGGg- -3'
miRNA:   3'- cCGCCGGC-GAGGggCGGCUCCa---UCaa -5'
23732 5' -63.4 NC_005261.1 + 19791 0.67 0.473769
Target:  5'- cGCGGCC-CUCCgaGCCGGGGg---- -3'
miRNA:   3'- cCGCCGGcGAGGggCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 37302 0.67 0.482849
Target:  5'- cGCGGaUCGCcCCCCGCaCGAGGa---- -3'
miRNA:   3'- cCGCC-GGCGaGGGGCG-GCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 39542 0.67 0.482849
Target:  5'- cGCGGCCGCcagCCCCGCgCGcgcgcGGcGGUc -3'
miRNA:   3'- cCGCCGGCGa--GGGGCG-GCu----CCaUCAa -5'
23732 5' -63.4 NC_005261.1 + 103967 0.67 0.491092
Target:  5'- cGGCGGCCGCcacacggaagcgcUCgCCGCCGccgcGGUcggccAGUa -3'
miRNA:   3'- -CCGCCGGCG-------------AGgGGCGGCu---CCA-----UCAa -5'
23732 5' -63.4 NC_005261.1 + 30343 0.67 0.491092
Target:  5'- uGGCGGCCGCgcucgcggCCCugaaggccggcgCGCCGggcgccgcggcgcGGGUGGa- -3'
miRNA:   3'- -CCGCCGGCGa-------GGG------------GCGGC-------------UCCAUCaa -5'
23732 5' -63.4 NC_005261.1 + 63441 0.67 0.492012
Target:  5'- cGGCguaGGCCGCg-CCCGCCGAGcGcccgcgagGGUUg -3'
miRNA:   3'- -CCG---CCGGCGagGGGCGGCUC-Ca-------UCAA- -5'
23732 5' -63.4 NC_005261.1 + 121637 0.67 0.492012
Target:  5'- cGGCGGCCGC-CgCCGgCGAGcGcGGg- -3'
miRNA:   3'- -CCGCCGGCGaGgGGCgGCUC-CaUCaa -5'
23732 5' -63.4 NC_005261.1 + 81912 0.67 0.492012
Target:  5'- cGCGGCCaGCUCCUCcUUGAGGUGc-- -3'
miRNA:   3'- cCGCCGG-CGAGGGGcGGCUCCAUcaa -5'
23732 5' -63.4 NC_005261.1 + 75666 0.67 0.492012
Target:  5'- uGGCGcGCgCGCagaaccucuUCCUCGCCGAGGa---- -3'
miRNA:   3'- -CCGC-CG-GCG---------AGGGGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 53367 0.67 0.492012
Target:  5'- cGGCcGCCGC-CCCgGCCGcGGUGu-- -3'
miRNA:   3'- -CCGcCGGCGaGGGgCGGCuCCAUcaa -5'
23732 5' -63.4 NC_005261.1 + 32247 0.67 0.492012
Target:  5'- cGCGGCCGCgcugcuggagCCgCaCGCCGAGGcgccgccgcUGGUg -3'
miRNA:   3'- cCGCCGGCGa---------GG-G-GCGGCUCC---------AUCAa -5'
23732 5' -63.4 NC_005261.1 + 115842 0.67 0.492012
Target:  5'- gGGCgcguuGGcCCGCgcggcCCCCGCCGAGGc---- -3'
miRNA:   3'- -CCG-----CC-GGCGa----GGGGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 14984 0.67 0.500326
Target:  5'- cGCGGCCGCgccggCCgCGCCcggagcgcgggagGAGG-AGUUg -3'
miRNA:   3'- cCGCCGGCGa----GGgGCGG-------------CUCCaUCAA- -5'
23732 5' -63.4 NC_005261.1 + 132037 0.67 0.501254
Target:  5'- cGUGGCCGCccuggaCCCCGggGAGGUGGc- -3'
miRNA:   3'- cCGCCGGCGa-----GGGGCggCUCCAUCaa -5'
23732 5' -63.4 NC_005261.1 + 103454 0.67 0.510572
Target:  5'- cGGuCGGCCGCcgCgCCCGUCGccAGGgcGUc -3'
miRNA:   3'- -CC-GCCGGCGa-G-GGGCGGC--UCCauCAa -5'
23732 5' -63.4 NC_005261.1 + 67489 0.67 0.510572
Target:  5'- cGCGGCCGC-CgCCaGCCGcGcGUAGUa -3'
miRNA:   3'- cCGCCGGCGaGgGG-CGGCuC-CAUCAa -5'
23732 5' -63.4 NC_005261.1 + 99862 0.67 0.510572
Target:  5'- cGGCcGCCGCgcgCCgCCGCCgcucggcgcGAGGgcGUUg -3'
miRNA:   3'- -CCGcCGGCGa--GG-GGCGG---------CUCCauCAA- -5'
23732 5' -63.4 NC_005261.1 + 37360 0.67 0.510572
Target:  5'- gGGCGG-UGCUCgCCGCCcGAGGcGGc- -3'
miRNA:   3'- -CCGCCgGCGAGgGGCGG-CUCCaUCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.