miRNA display CGI


Results 61 - 80 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 5' -63.4 NC_005261.1 + 92362 0.68 0.429728
Target:  5'- aGGCggGGCagcaGCUCCCaauGCCcAGGUAGUa -3'
miRNA:   3'- -CCG--CCGg---CGAGGGg--CGGcUCCAUCAa -5'
23732 5' -63.4 NC_005261.1 + 37546 0.69 0.396284
Target:  5'- cGCGcGCCGCUCCcgCCGCCGccaccgGGGUGcGUc -3'
miRNA:   3'- cCGC-CGGCGAGG--GGCGGC------UCCAU-CAa -5'
23732 5' -63.4 NC_005261.1 + 2659 0.69 0.388189
Target:  5'- aGCGGCgGCUCCCgccgCGCUGGGGa---- -3'
miRNA:   3'- cCGCCGgCGAGGG----GCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 123237 0.69 0.387385
Target:  5'- aGCGGCCGCccaggcgcgggCCCCGCCcaucgcccgugacGAGGUgcgGGUg -3'
miRNA:   3'- cCGCCGGCGa----------GGGGCGG-------------CUCCA---UCAa -5'
23732 5' -63.4 NC_005261.1 + 641 0.69 0.380203
Target:  5'- cGGCGGCCGCcagcgccgcgUCCCCggcGCCGAGuccUGGc- -3'
miRNA:   3'- -CCGCCGGCG----------AGGGG---CGGCUCc--AUCaa -5'
23732 5' -63.4 NC_005261.1 + 119537 0.69 0.372328
Target:  5'- cGCGGCCGagcaaggCCCCGCCGcGGGgccgcaAGUg -3'
miRNA:   3'- cCGCCGGCga-----GGGGCGGC-UCCa-----UCAa -5'
23732 5' -63.4 NC_005261.1 + 38626 0.69 0.364564
Target:  5'- cGCGGCCGagcCCgCCGCCGAcGGUgacGGUg -3'
miRNA:   3'- cCGCCGGCga-GG-GGCGGCU-CCA---UCAa -5'
23732 5' -63.4 NC_005261.1 + 64518 0.7 0.349376
Target:  5'- cGCgGGCgGCUCCUCGUCGGGGggcaGGUc -3'
miRNA:   3'- cCG-CCGgCGAGGGGCGGCUCCa---UCAa -5'
23732 5' -63.4 NC_005261.1 + 11927 0.7 0.349376
Target:  5'- cGGCGGCUGCggcggCCCgCGCCGcGGcGGc- -3'
miRNA:   3'- -CCGCCGGCGa----GGG-GCGGCuCCaUCaa -5'
23732 5' -63.4 NC_005261.1 + 28595 0.7 0.341952
Target:  5'- cGGCgGGCCGC-CCgCGCCGAGcUGGc- -3'
miRNA:   3'- -CCG-CCGGCGaGGgGCGGCUCcAUCaa -5'
23732 5' -63.4 NC_005261.1 + 35988 0.7 0.341952
Target:  5'- cGGCGGCgGCUCCUgGCgGcGGUAa-- -3'
miRNA:   3'- -CCGCCGgCGAGGGgCGgCuCCAUcaa -5'
23732 5' -63.4 NC_005261.1 + 95744 0.7 0.341952
Target:  5'- cGGC-GCCGCcgCCgCCGCCGGGGgcGc- -3'
miRNA:   3'- -CCGcCGGCGa-GG-GGCGGCUCCauCaa -5'
23732 5' -63.4 NC_005261.1 + 131228 0.7 0.335369
Target:  5'- cGUGGCCGCgcgcaucgaggcugaCCUCGCCGAGGUc--- -3'
miRNA:   3'- cCGCCGGCGa--------------GGGGCGGCUCCAucaa -5'
23732 5' -63.4 NC_005261.1 + 4914 0.7 0.32745
Target:  5'- cGGCGGCUGC-CUCCGCCGcGGc---- -3'
miRNA:   3'- -CCGCCGGCGaGGGGCGGCuCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 63759 0.7 0.32745
Target:  5'- aGGCcGCCGUguagCCCaCGCCGAGGUc--- -3'
miRNA:   3'- -CCGcCGGCGa---GGG-GCGGCUCCAucaa -5'
23732 5' -63.4 NC_005261.1 + 35719 0.7 0.313408
Target:  5'- cGGUGGCgGC-CCCgGCCGAGGccaccUGGg- -3'
miRNA:   3'- -CCGCCGgCGaGGGgCGGCUCC-----AUCaa -5'
23732 5' -63.4 NC_005261.1 + 4408 0.71 0.299826
Target:  5'- cGGCGGCgCGCUgccgggccaggCCUCGCCgGAGGgcGUc -3'
miRNA:   3'- -CCGCCG-GCGA-----------GGGGCGG-CUCCauCAa -5'
23732 5' -63.4 NC_005261.1 + 8795 0.71 0.286705
Target:  5'- cGGCGGCUGCag-CCGCCGAGGg---- -3'
miRNA:   3'- -CCGCCGGCGaggGGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 35677 0.71 0.280315
Target:  5'- -cCGGCCGCacCCCCGCCGGcgagccccGGUGGg- -3'
miRNA:   3'- ccGCCGGCGa-GGGGCGGCU--------CCAUCaa -5'
23732 5' -63.4 NC_005261.1 + 24925 0.71 0.27404
Target:  5'- cGGCGGCUGCag-CCGCCGAGGggcAGg- -3'
miRNA:   3'- -CCGCCGGCGaggGGCGGCUCCa--UCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.