miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 5' -63.4 NC_005261.1 + 35988 0.7 0.341952
Target:  5'- cGGCGGCgGCUCCUgGCgGcGGUAa-- -3'
miRNA:   3'- -CCGCCGgCGAGGGgCGgCuCCAUcaa -5'
23732 5' -63.4 NC_005261.1 + 37302 0.67 0.482849
Target:  5'- cGCGGaUCGCcCCCCGCaCGAGGa---- -3'
miRNA:   3'- cCGCC-GGCGaGGGGCG-GCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 37360 0.67 0.510572
Target:  5'- gGGCGG-UGCUCgCCGCCcGAGGcGGc- -3'
miRNA:   3'- -CCGCCgGCGAGgGGCGG-CUCCaUCaa -5'
23732 5' -63.4 NC_005261.1 + 37546 0.69 0.396284
Target:  5'- cGCGcGCCGCUCCcgCCGCCGccaccgGGGUGcGUc -3'
miRNA:   3'- cCGC-CGGCGAGG--GGCGGC------UCCAU-CAa -5'
23732 5' -63.4 NC_005261.1 + 38626 0.69 0.364564
Target:  5'- cGCGGCCGagcCCgCCGCCGAcGGUgacGGUg -3'
miRNA:   3'- cCGCCGGCga-GG-GGCGGCU-CCA---UCAa -5'
23732 5' -63.4 NC_005261.1 + 39542 0.67 0.482849
Target:  5'- cGCGGCCGCcagCCCCGCgCGcgcgcGGcGGUc -3'
miRNA:   3'- cCGCCGGCGa--GGGGCG-GCu----CCaUCAa -5'
23732 5' -63.4 NC_005261.1 + 42270 0.66 0.538936
Target:  5'- aGGCGGCCGCgCCCagcaGCCGccGcgAGa- -3'
miRNA:   3'- -CCGCCGGCGaGGGg---CGGCucCa-UCaa -5'
23732 5' -63.4 NC_005261.1 + 42673 0.66 0.519961
Target:  5'- cGGCGGCCGggCCgCCGCCGGc------ -3'
miRNA:   3'- -CCGCCGGCgaGG-GGCGGCUccaucaa -5'
23732 5' -63.4 NC_005261.1 + 43284 0.72 0.233233
Target:  5'- cGCGGCCGCcuUUCCCGCgGGGGgcGc- -3'
miRNA:   3'- cCGCCGGCG--AGGGGCGgCUCCauCaa -5'
23732 5' -63.4 NC_005261.1 + 46302 0.66 0.529418
Target:  5'- cGGCGcGCCGCaguagCCCCG-CGAGGc---- -3'
miRNA:   3'- -CCGC-CGGCGa----GGGGCgGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 52696 0.66 0.519961
Target:  5'- gGGCGcGCCGCUgCCgGCCGAuGaaAGUg -3'
miRNA:   3'- -CCGC-CGGCGAgGGgCGGCU-CcaUCAa -5'
23732 5' -63.4 NC_005261.1 + 53367 0.67 0.492012
Target:  5'- cGGCcGCCGC-CCCgGCCGcGGUGu-- -3'
miRNA:   3'- -CCGcCGGCGaGGGgCGGCuCCAUcaa -5'
23732 5' -63.4 NC_005261.1 + 58104 0.66 0.525627
Target:  5'- gGGCGGCaccagccgcgcgaGCagCCUGCCGAGcGUGGc- -3'
miRNA:   3'- -CCGCCGg------------CGagGGGCGGCUC-CAUCaa -5'
23732 5' -63.4 NC_005261.1 + 62868 0.68 0.446185
Target:  5'- cGGCGGCCuuuuaugcgcggcGCagCCCGCgCGAGGcGGg- -3'
miRNA:   3'- -CCGCCGG-------------CGagGGGCG-GCUCCaUCaa -5'
23732 5' -63.4 NC_005261.1 + 63009 0.67 0.464776
Target:  5'- cGGCGGCCGCg-CCCGCgCGGGc----- -3'
miRNA:   3'- -CCGCCGGCGagGGGCG-GCUCcaucaa -5'
23732 5' -63.4 NC_005261.1 + 63441 0.67 0.492012
Target:  5'- cGGCguaGGCCGCg-CCCGCCGAGcGcccgcgagGGUUg -3'
miRNA:   3'- -CCG---CCGGCGagGGGCGGCUC-Ca-------UCAA- -5'
23732 5' -63.4 NC_005261.1 + 63759 0.7 0.32745
Target:  5'- aGGCcGCCGUguagCCCaCGCCGAGGUc--- -3'
miRNA:   3'- -CCGcCGGCGa---GGG-GCGGCUCCAucaa -5'
23732 5' -63.4 NC_005261.1 + 64518 0.7 0.349376
Target:  5'- cGCgGGCgGCUCCUCGUCGGGGggcaGGUc -3'
miRNA:   3'- cCG-CCGgCGAGGGGCGGCUCCa---UCAa -5'
23732 5' -63.4 NC_005261.1 + 66324 0.66 0.538936
Target:  5'- aGGCGGCCGUgcagCCCa--CGAGGUc--- -3'
miRNA:   3'- -CCGCCGGCGa---GGGgcgGCUCCAucaa -5'
23732 5' -63.4 NC_005261.1 + 67489 0.67 0.510572
Target:  5'- cGCGGCCGC-CgCCaGCCGcGcGUAGUa -3'
miRNA:   3'- cCGCCGGCGaGgGG-CGGCuC-CAUCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.