Results 41 - 60 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 70537 | 0.66 | 0.558142 |
Target: 5'- cGGCGGCgccCGCgccccaCCCGCCGcAGGgcGc- -3' miRNA: 3'- -CCGCCG---GCGag----GGGCGGC-UCCauCaa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 72775 | 0.66 | 0.538936 |
Target: 5'- cGGCGGCCGCgcaCgCGuCCGGGGc---- -3' miRNA: 3'- -CCGCCGGCGag-GgGC-GGCUCCaucaa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 72877 | 0.76 | 0.130431 |
Target: 5'- gGGCaGGuCCGCcCCgCCGCCGGGGUAGa- -3' miRNA: 3'- -CCG-CC-GGCGaGG-GGCGGCUCCAUCaa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 74365 | 0.66 | 0.519961 |
Target: 5'- gGGCGGCCGCguccgcCCCCGCCc-------- -3' miRNA: 3'- -CCGCCGGCGa-----GGGGCGGcuccaucaa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 74901 | 0.66 | 0.529418 |
Target: 5'- cGGCGGcCCGCgcuggCCgCGCgGGGGaGGg- -3' miRNA: 3'- -CCGCC-GGCGa----GGgGCGgCUCCaUCaa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 74962 | 0.66 | 0.538936 |
Target: 5'- cGGCgcgcucgaGGCCGCgcgCCCgCGCCG-GGUGc-- -3' miRNA: 3'- -CCG--------CCGGCGa--GGG-GCGGCuCCAUcaa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 75666 | 0.67 | 0.492012 |
Target: 5'- uGGCGcGCgCGCagaaccucuUCCUCGCCGAGGa---- -3' miRNA: 3'- -CCGC-CG-GCG---------AGGGGCGGCUCCaucaa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 77337 | 0.66 | 0.548513 |
Target: 5'- cGGC-GCCGCcCCCCGCCauGAGcGcAGUg -3' miRNA: 3'- -CCGcCGGCGaGGGGCGG--CUC-CaUCAa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 81912 | 0.67 | 0.492012 |
Target: 5'- cGCGGCCaGCUCCUCcUUGAGGUGc-- -3' miRNA: 3'- cCGCCGG-CGAGGGGcGGCUCCAUcaa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 83601 | 0.72 | 0.233233 |
Target: 5'- aGCGcGUCGCUCUCCGCCGcGGcGUGGUc -3' miRNA: 3'- cCGC-CGGCGAGGGGCGGC-UC-CAUCAa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 83843 | 0.74 | 0.17953 |
Target: 5'- uGGCgGGCCGCggCCCCGCUGGGcUGGg- -3' miRNA: 3'- -CCG-CCGGCGa-GGGGCGGCUCcAUCaa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 85293 | 0.66 | 0.519961 |
Target: 5'- gGGCucccgGGCgGCUUCCCGuuGGGGaAGa- -3' miRNA: 3'- -CCG-----CCGgCGAGGGGCggCUCCaUCaa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 87503 | 0.66 | 0.567819 |
Target: 5'- uGGCGcGCaggCGCUCgCCGCCGuGGaAGa- -3' miRNA: 3'- -CCGC-CG---GCGAGgGGCGGCuCCaUCaa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 88570 | 0.66 | 0.529418 |
Target: 5'- cGGCGacgcgucCCGCUUCgCCGCCGAGGc---- -3' miRNA: 3'- -CCGCc------GGCGAGG-GGCGGCUCCaucaa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 89291 | 0.73 | 0.22784 |
Target: 5'- cGGCGGCCGC-CaaCGCCGAGGa---- -3' miRNA: 3'- -CCGCCGGCGaGggGCGGCUCCaucaa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 91172 | 0.66 | 0.567819 |
Target: 5'- gGGCGGCaGCU-CCCGCCGGGc----- -3' miRNA: 3'- -CCGCCGgCGAgGGGCGGCUCcaucaa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 92362 | 0.68 | 0.429728 |
Target: 5'- aGGCggGGCagcaGCUCCCaauGCCcAGGUAGUa -3' miRNA: 3'- -CCG--CCGg---CGAGGGg--CGGcUCCAUCAa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 95744 | 0.7 | 0.341952 |
Target: 5'- cGGC-GCCGCcgCCgCCGCCGGGGgcGc- -3' miRNA: 3'- -CCGcCGGCGa-GG-GGCGGCUCCauCaa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 98329 | 0.66 | 0.536074 |
Target: 5'- aGCGGCgGCgcgCCCCgugucgacgcggggGCgGGGGUGGg- -3' miRNA: 3'- cCGCCGgCGa--GGGG--------------CGgCUCCAUCaa -5' |
|||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 98476 | 0.68 | 0.429728 |
Target: 5'- gGGCGGCCGUcCUCCGCgGGcucGGgcgGGUa -3' miRNA: 3'- -CCGCCGGCGaGGGGCGgCU---CCa--UCAa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home