Results 61 - 80 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 98569 | 0.68 | 0.429728 |
Target: 5'- gGGCGGCCGUcCUCCGCgGGcucGGgcgAGUa -3' miRNA: 3'- -CCGCCGGCGaGGGGCGgCU---CCa--UCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 99862 | 0.67 | 0.510572 |
Target: 5'- cGGCcGCCGCgcgCCgCCGCCgcucggcgcGAGGgcGUUg -3' miRNA: 3'- -CCGcCGGCGa--GG-GGCGG---------CUCCauCAA- -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 101548 | 0.68 | 0.438346 |
Target: 5'- -uCGGCCGCcacgaCCUCGCCGAGGa---- -3' miRNA: 3'- ccGCCGGCGa----GGGGCGGCUCCaucaa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 103454 | 0.67 | 0.510572 |
Target: 5'- cGGuCGGCCGCcgCgCCCGUCGccAGGgcGUc -3' miRNA: 3'- -CC-GCCGGCGa-G-GGGCGGC--UCCauCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 103967 | 0.67 | 0.491092 |
Target: 5'- cGGCGGCCGCcacacggaagcgcUCgCCGCCGccgcGGUcggccAGUa -3' miRNA: 3'- -CCGCCGGCG-------------AGgGGCGGCu---CCA-----UCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 107730 | 0.67 | 0.455872 |
Target: 5'- aGGCGGCUGCgCCUCGgCCGcGGgggGGg- -3' miRNA: 3'- -CCGCCGGCGaGGGGC-GGCuCCa--UCaa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 114997 | 0.67 | 0.473769 |
Target: 5'- cGGCcGCCGCggccccggCCCCGCgGAGGccucgucccaaUAGUc -3' miRNA: 3'- -CCGcCGGCGa-------GGGGCGgCUCC-----------AUCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 115452 | 0.67 | 0.455872 |
Target: 5'- cGCGGCCGgaCUCCuCCGCCucGGUGu-- -3' miRNA: 3'- cCGCCGGC--GAGG-GGCGGcuCCAUcaa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 115842 | 0.67 | 0.492012 |
Target: 5'- gGGCgcguuGGcCCGCgcggcCCCCGCCGAGGc---- -3' miRNA: 3'- -CCG-----CC-GGCGa----GGGGCGGCUCCaucaa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 115922 | 0.66 | 0.519961 |
Target: 5'- cGGCcGCCGCgUCCgCGCgCGGGGcagGGUa -3' miRNA: 3'- -CCGcCGGCG-AGGgGCG-GCUCCa--UCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 116072 | 0.67 | 0.454987 |
Target: 5'- uGGCGcGCCGgUCCCCGuggaugccgcgguCCGcgacgaagaucGGGUAGUa -3' miRNA: 3'- -CCGC-CGGCgAGGGGC-------------GGC-----------UCCAUCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 116172 | 0.68 | 0.438346 |
Target: 5'- cGCGGCCGCgUCCCCgacGCCGcuGGgcGc- -3' miRNA: 3'- cCGCCGGCG-AGGGG---CGGCu-CCauCaa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 116836 | 0.66 | 0.567819 |
Target: 5'- cGUGGCCG-UCCCCGCCGc-GaAGUUc -3' miRNA: 3'- cCGCCGGCgAGGGGCGGCucCaUCAA- -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 117168 | 0.72 | 0.233233 |
Target: 5'- aGGCGGUCGCcaaggaCCCCGgCGGGGcGGUg -3' miRNA: 3'- -CCGCCGGCGa-----GGGGCgGCUCCaUCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 118582 | 0.67 | 0.455872 |
Target: 5'- cGGCGGCgCGCgCCgCCGCCGcGG-AGc- -3' miRNA: 3'- -CCGCCG-GCGaGG-GGCGGCuCCaUCaa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 119537 | 0.69 | 0.372328 |
Target: 5'- cGCGGCCGagcaaggCCCCGCCGcGGGgccgcaAGUg -3' miRNA: 3'- cCGCCGGCga-----GGGGCGGC-UCCa-----UCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 119846 | 0.66 | 0.54276 |
Target: 5'- cGGCaGCCugccccugaccgugcGCUCCCUgaccgccgcaGCCGAGGgcGUg -3' miRNA: 3'- -CCGcCGG---------------CGAGGGG----------CGGCUCCauCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 121637 | 0.67 | 0.492012 |
Target: 5'- cGGCGGCCGC-CgCCGgCGAGcGcGGg- -3' miRNA: 3'- -CCGCCGGCGaGgGGCgGCUC-CaUCaa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 123237 | 0.69 | 0.387385 |
Target: 5'- aGCGGCCGCccaggcgcgggCCCCGCCcaucgcccgugacGAGGUgcgGGUg -3' miRNA: 3'- cCGCCGGCGa----------GGGGCGG-------------CUCCA---UCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 124760 | 0.67 | 0.473769 |
Target: 5'- aGCGGCCGcCUCCagGCUGAGGagcgGGg- -3' miRNA: 3'- cCGCCGGC-GAGGggCGGCUCCa---UCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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