miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 5' -63.4 NC_005261.1 + 136614 0.66 0.548513
Target:  5'- aGCGGCgCGCg-CgCGCCGAGGgcGg- -3'
miRNA:   3'- cCGCCG-GCGagGgGCGGCUCCauCaa -5'
23732 5' -63.4 NC_005261.1 + 132076 0.66 0.529418
Target:  5'- cGCGGCCGCcgucgCCgcugCCGCgGAGGgcGg- -3'
miRNA:   3'- cCGCCGGCGa----GG----GGCGgCUCCauCaa -5'
23732 5' -63.4 NC_005261.1 + 132037 0.67 0.501254
Target:  5'- cGUGGCCGCccuggaCCCCGggGAGGUGGc- -3'
miRNA:   3'- cCGCCGGCGa-----GGGGCggCUCCAUCaa -5'
23732 5' -63.4 NC_005261.1 + 131228 0.7 0.335369
Target:  5'- cGUGGCCGCgcgcaucgaggcugaCCUCGCCGAGGUc--- -3'
miRNA:   3'- cCGCCGGCGa--------------GGGGCGGCUCCAucaa -5'
23732 5' -63.4 NC_005261.1 + 130693 0.66 0.538936
Target:  5'- cGCGuGCUGCUcgagcaCCUCGCCGAGGa---- -3'
miRNA:   3'- cCGC-CGGCGA------GGGGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 129326 0.66 0.538936
Target:  5'- uGGC-GCCGCgucgccgaCCUCGCCGcGGUAGc- -3'
miRNA:   3'- -CCGcCGGCGa-------GGGGCGGCuCCAUCaa -5'
23732 5' -63.4 NC_005261.1 + 127684 0.72 0.238734
Target:  5'- cGGCGGCCGCUgCCCCggcggcGCCgGAGG-AGc- -3'
miRNA:   3'- -CCGCCGGCGA-GGGG------CGG-CUCCaUCaa -5'
23732 5' -63.4 NC_005261.1 + 127293 0.74 0.188403
Target:  5'- gGGCaGCC-CUCCCCGCCGGcuggcGGUGGg- -3'
miRNA:   3'- -CCGcCGGcGAGGGGCGGCU-----CCAUCaa -5'
23732 5' -63.4 NC_005261.1 + 124760 0.67 0.473769
Target:  5'- aGCGGCCGcCUCCagGCUGAGGagcgGGg- -3'
miRNA:   3'- cCGCCGGC-GAGGggCGGCUCCa---UCaa -5'
23732 5' -63.4 NC_005261.1 + 123237 0.69 0.387385
Target:  5'- aGCGGCCGCccaggcgcgggCCCCGCCcaucgcccgugacGAGGUgcgGGUg -3'
miRNA:   3'- cCGCCGGCGa----------GGGGCGG-------------CUCCA---UCAa -5'
23732 5' -63.4 NC_005261.1 + 121637 0.67 0.492012
Target:  5'- cGGCGGCCGC-CgCCGgCGAGcGcGGg- -3'
miRNA:   3'- -CCGCCGGCGaGgGGCgGCUC-CaUCaa -5'
23732 5' -63.4 NC_005261.1 + 119846 0.66 0.54276
Target:  5'- cGGCaGCCugccccugaccgugcGCUCCCUgaccgccgcaGCCGAGGgcGUg -3'
miRNA:   3'- -CCGcCGG---------------CGAGGGG----------CGGCUCCauCAa -5'
23732 5' -63.4 NC_005261.1 + 119537 0.69 0.372328
Target:  5'- cGCGGCCGagcaaggCCCCGCCGcGGGgccgcaAGUg -3'
miRNA:   3'- cCGCCGGCga-----GGGGCGGC-UCCa-----UCAa -5'
23732 5' -63.4 NC_005261.1 + 118582 0.67 0.455872
Target:  5'- cGGCGGCgCGCgCCgCCGCCGcGG-AGc- -3'
miRNA:   3'- -CCGCCG-GCGaGG-GGCGGCuCCaUCaa -5'
23732 5' -63.4 NC_005261.1 + 117168 0.72 0.233233
Target:  5'- aGGCGGUCGCcaaggaCCCCGgCGGGGcGGUg -3'
miRNA:   3'- -CCGCCGGCGa-----GGGGCgGCUCCaUCAa -5'
23732 5' -63.4 NC_005261.1 + 116836 0.66 0.567819
Target:  5'- cGUGGCCG-UCCCCGCCGc-GaAGUUc -3'
miRNA:   3'- cCGCCGGCgAGGGGCGGCucCaUCAA- -5'
23732 5' -63.4 NC_005261.1 + 116172 0.68 0.438346
Target:  5'- cGCGGCCGCgUCCCCgacGCCGcuGGgcGc- -3'
miRNA:   3'- cCGCCGGCG-AGGGG---CGGCu-CCauCaa -5'
23732 5' -63.4 NC_005261.1 + 116072 0.67 0.454987
Target:  5'- uGGCGcGCCGgUCCCCGuggaugccgcgguCCGcgacgaagaucGGGUAGUa -3'
miRNA:   3'- -CCGC-CGGCgAGGGGC-------------GGC-----------UCCAUCAa -5'
23732 5' -63.4 NC_005261.1 + 115922 0.66 0.519961
Target:  5'- cGGCcGCCGCgUCCgCGCgCGGGGcagGGUa -3'
miRNA:   3'- -CCGcCGGCG-AGGgGCG-GCUCCa--UCAa -5'
23732 5' -63.4 NC_005261.1 + 115842 0.67 0.492012
Target:  5'- gGGCgcguuGGcCCGCgcggcCCCCGCCGAGGc---- -3'
miRNA:   3'- -CCG-----CC-GGCGa----GGGGCGGCUCCaucaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.