miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 5' -63.4 NC_005261.1 + 115452 0.67 0.455872
Target:  5'- cGCGGCCGgaCUCCuCCGCCucGGUGu-- -3'
miRNA:   3'- cCGCCGGC--GAGG-GGCGGcuCCAUcaa -5'
23732 5' -63.4 NC_005261.1 + 114997 0.67 0.473769
Target:  5'- cGGCcGCCGCggccccggCCCCGCgGAGGccucgucccaaUAGUc -3'
miRNA:   3'- -CCGcCGGCGa-------GGGGCGgCUCC-----------AUCAa -5'
23732 5' -63.4 NC_005261.1 + 107730 0.67 0.455872
Target:  5'- aGGCGGCUGCgCCUCGgCCGcGGgggGGg- -3'
miRNA:   3'- -CCGCCGGCGaGGGGC-GGCuCCa--UCaa -5'
23732 5' -63.4 NC_005261.1 + 103967 0.67 0.491092
Target:  5'- cGGCGGCCGCcacacggaagcgcUCgCCGCCGccgcGGUcggccAGUa -3'
miRNA:   3'- -CCGCCGGCG-------------AGgGGCGGCu---CCA-----UCAa -5'
23732 5' -63.4 NC_005261.1 + 103454 0.67 0.510572
Target:  5'- cGGuCGGCCGCcgCgCCCGUCGccAGGgcGUc -3'
miRNA:   3'- -CC-GCCGGCGa-G-GGGCGGC--UCCauCAa -5'
23732 5' -63.4 NC_005261.1 + 101548 0.68 0.438346
Target:  5'- -uCGGCCGCcacgaCCUCGCCGAGGa---- -3'
miRNA:   3'- ccGCCGGCGa----GGGGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 99862 0.67 0.510572
Target:  5'- cGGCcGCCGCgcgCCgCCGCCgcucggcgcGAGGgcGUUg -3'
miRNA:   3'- -CCGcCGGCGa--GG-GGCGG---------CUCCauCAA- -5'
23732 5' -63.4 NC_005261.1 + 98569 0.68 0.429728
Target:  5'- gGGCGGCCGUcCUCCGCgGGcucGGgcgAGUa -3'
miRNA:   3'- -CCGCCGGCGaGGGGCGgCU---CCa--UCAa -5'
23732 5' -63.4 NC_005261.1 + 98476 0.68 0.429728
Target:  5'- gGGCGGCCGUcCUCCGCgGGcucGGgcgGGUa -3'
miRNA:   3'- -CCGCCGGCGaGGGGCGgCU---CCa--UCAa -5'
23732 5' -63.4 NC_005261.1 + 98329 0.66 0.536074
Target:  5'- aGCGGCgGCgcgCCCCgugucgacgcggggGCgGGGGUGGg- -3'
miRNA:   3'- cCGCCGgCGa--GGGG--------------CGgCUCCAUCaa -5'
23732 5' -63.4 NC_005261.1 + 95744 0.7 0.341952
Target:  5'- cGGC-GCCGCcgCCgCCGCCGGGGgcGc- -3'
miRNA:   3'- -CCGcCGGCGa-GG-GGCGGCUCCauCaa -5'
23732 5' -63.4 NC_005261.1 + 92362 0.68 0.429728
Target:  5'- aGGCggGGCagcaGCUCCCaauGCCcAGGUAGUa -3'
miRNA:   3'- -CCG--CCGg---CGAGGGg--CGGcUCCAUCAa -5'
23732 5' -63.4 NC_005261.1 + 91172 0.66 0.567819
Target:  5'- gGGCGGCaGCU-CCCGCCGGGc----- -3'
miRNA:   3'- -CCGCCGgCGAgGGGCGGCUCcaucaa -5'
23732 5' -63.4 NC_005261.1 + 89291 0.73 0.22784
Target:  5'- cGGCGGCCGC-CaaCGCCGAGGa---- -3'
miRNA:   3'- -CCGCCGGCGaGggGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 88570 0.66 0.529418
Target:  5'- cGGCGacgcgucCCGCUUCgCCGCCGAGGc---- -3'
miRNA:   3'- -CCGCc------GGCGAGG-GGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 87503 0.66 0.567819
Target:  5'- uGGCGcGCaggCGCUCgCCGCCGuGGaAGa- -3'
miRNA:   3'- -CCGC-CG---GCGAGgGGCGGCuCCaUCaa -5'
23732 5' -63.4 NC_005261.1 + 85293 0.66 0.519961
Target:  5'- gGGCucccgGGCgGCUUCCCGuuGGGGaAGa- -3'
miRNA:   3'- -CCG-----CCGgCGAGGGGCggCUCCaUCaa -5'
23732 5' -63.4 NC_005261.1 + 83843 0.74 0.17953
Target:  5'- uGGCgGGCCGCggCCCCGCUGGGcUGGg- -3'
miRNA:   3'- -CCG-CCGGCGa-GGGGCGGCUCcAUCaa -5'
23732 5' -63.4 NC_005261.1 + 83601 0.72 0.233233
Target:  5'- aGCGcGUCGCUCUCCGCCGcGGcGUGGUc -3'
miRNA:   3'- cCGC-CGGCGAGGGGCGGC-UC-CAUCAa -5'
23732 5' -63.4 NC_005261.1 + 81912 0.67 0.492012
Target:  5'- cGCGGCCaGCUCCUCcUUGAGGUGc-- -3'
miRNA:   3'- cCGCCGG-CGAGGGGcGGCUCCAUcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.