miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23732 5' -63.4 NC_005261.1 + 77337 0.66 0.548513
Target:  5'- cGGC-GCCGCcCCCCGCCauGAGcGcAGUg -3'
miRNA:   3'- -CCGcCGGCGaGGGGCGG--CUC-CaUCAa -5'
23732 5' -63.4 NC_005261.1 + 75666 0.67 0.492012
Target:  5'- uGGCGcGCgCGCagaaccucuUCCUCGCCGAGGa---- -3'
miRNA:   3'- -CCGC-CG-GCG---------AGGGGCGGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 74962 0.66 0.538936
Target:  5'- cGGCgcgcucgaGGCCGCgcgCCCgCGCCG-GGUGc-- -3'
miRNA:   3'- -CCG--------CCGGCGa--GGG-GCGGCuCCAUcaa -5'
23732 5' -63.4 NC_005261.1 + 74901 0.66 0.529418
Target:  5'- cGGCGGcCCGCgcuggCCgCGCgGGGGaGGg- -3'
miRNA:   3'- -CCGCC-GGCGa----GGgGCGgCUCCaUCaa -5'
23732 5' -63.4 NC_005261.1 + 74365 0.66 0.519961
Target:  5'- gGGCGGCCGCguccgcCCCCGCCc-------- -3'
miRNA:   3'- -CCGCCGGCGa-----GGGGCGGcuccaucaa -5'
23732 5' -63.4 NC_005261.1 + 72877 0.76 0.130431
Target:  5'- gGGCaGGuCCGCcCCgCCGCCGGGGUAGa- -3'
miRNA:   3'- -CCG-CC-GGCGaGG-GGCGGCUCCAUCaa -5'
23732 5' -63.4 NC_005261.1 + 72775 0.66 0.538936
Target:  5'- cGGCGGCCGCgcaCgCGuCCGGGGc---- -3'
miRNA:   3'- -CCGCCGGCGag-GgGC-GGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 70537 0.66 0.558142
Target:  5'- cGGCGGCgccCGCgccccaCCCGCCGcAGGgcGc- -3'
miRNA:   3'- -CCGCCG---GCGag----GGGCGGC-UCCauCaa -5'
23732 5' -63.4 NC_005261.1 + 67489 0.67 0.510572
Target:  5'- cGCGGCCGC-CgCCaGCCGcGcGUAGUa -3'
miRNA:   3'- cCGCCGGCGaGgGG-CGGCuC-CAUCAa -5'
23732 5' -63.4 NC_005261.1 + 66324 0.66 0.538936
Target:  5'- aGGCGGCCGUgcagCCCa--CGAGGUc--- -3'
miRNA:   3'- -CCGCCGGCGa---GGGgcgGCUCCAucaa -5'
23732 5' -63.4 NC_005261.1 + 64518 0.7 0.349376
Target:  5'- cGCgGGCgGCUCCUCGUCGGGGggcaGGUc -3'
miRNA:   3'- cCG-CCGgCGAGGGGCGGCUCCa---UCAa -5'
23732 5' -63.4 NC_005261.1 + 63759 0.7 0.32745
Target:  5'- aGGCcGCCGUguagCCCaCGCCGAGGUc--- -3'
miRNA:   3'- -CCGcCGGCGa---GGG-GCGGCUCCAucaa -5'
23732 5' -63.4 NC_005261.1 + 63441 0.67 0.492012
Target:  5'- cGGCguaGGCCGCg-CCCGCCGAGcGcccgcgagGGUUg -3'
miRNA:   3'- -CCG---CCGGCGagGGGCGGCUC-Ca-------UCAA- -5'
23732 5' -63.4 NC_005261.1 + 63009 0.67 0.464776
Target:  5'- cGGCGGCCGCg-CCCGCgCGGGc----- -3'
miRNA:   3'- -CCGCCGGCGagGGGCG-GCUCcaucaa -5'
23732 5' -63.4 NC_005261.1 + 62868 0.68 0.446185
Target:  5'- cGGCGGCCuuuuaugcgcggcGCagCCCGCgCGAGGcGGg- -3'
miRNA:   3'- -CCGCCGG-------------CGagGGGCG-GCUCCaUCaa -5'
23732 5' -63.4 NC_005261.1 + 58104 0.66 0.525627
Target:  5'- gGGCGGCaccagccgcgcgaGCagCCUGCCGAGcGUGGc- -3'
miRNA:   3'- -CCGCCGg------------CGagGGGCGGCUC-CAUCaa -5'
23732 5' -63.4 NC_005261.1 + 53367 0.67 0.492012
Target:  5'- cGGCcGCCGC-CCCgGCCGcGGUGu-- -3'
miRNA:   3'- -CCGcCGGCGaGGGgCGGCuCCAUcaa -5'
23732 5' -63.4 NC_005261.1 + 52696 0.66 0.519961
Target:  5'- gGGCGcGCCGCUgCCgGCCGAuGaaAGUg -3'
miRNA:   3'- -CCGC-CGGCGAgGGgCGGCU-CcaUCAa -5'
23732 5' -63.4 NC_005261.1 + 46302 0.66 0.529418
Target:  5'- cGGCGcGCCGCaguagCCCCG-CGAGGc---- -3'
miRNA:   3'- -CCGC-CGGCGa----GGGGCgGCUCCaucaa -5'
23732 5' -63.4 NC_005261.1 + 43284 0.72 0.233233
Target:  5'- cGCGGCCGCcuUUCCCGCgGGGGgcGc- -3'
miRNA:   3'- cCGCCGGCG--AGGGGCGgCUCCauCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.