Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23732 | 5' | -63.4 | NC_005261.1 | + | 117168 | 0.72 | 0.233233 |
Target: 5'- aGGCGGUCGCcaaggaCCCCGgCGGGGcGGUg -3' miRNA: 3'- -CCGCCGGCGa-----GGGGCgGCUCCaUCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 83601 | 0.72 | 0.233233 |
Target: 5'- aGCGcGUCGCUCUCCGCCGcGGcGUGGUc -3' miRNA: 3'- cCGC-CGGCGAGGGGCGGC-UC-CAUCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 89291 | 0.73 | 0.22784 |
Target: 5'- cGGCGGCCGC-CaaCGCCGAGGa---- -3' miRNA: 3'- -CCGCCGGCGaGggGCGGCUCCaucaa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 127293 | 0.74 | 0.188403 |
Target: 5'- gGGCaGCC-CUCCCCGCCGGcuggcGGUGGg- -3' miRNA: 3'- -CCGcCGGcGAGGGGCGGCU-----CCAUCaa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 83843 | 0.74 | 0.17953 |
Target: 5'- uGGCgGGCCGCggCCCCGCUGGGcUGGg- -3' miRNA: 3'- -CCG-CCGGCGa-GGGGCGGCUCcAUCaa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 4914 | 0.7 | 0.32745 |
Target: 5'- cGGCGGCUGC-CUCCGCCGcGGc---- -3' miRNA: 3'- -CCGCCGGCGaGGGGCGGCuCCaucaa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 131228 | 0.7 | 0.335369 |
Target: 5'- cGUGGCCGCgcgcaucgaggcugaCCUCGCCGAGGUc--- -3' miRNA: 3'- cCGCCGGCGa--------------GGGGCGGCUCCAucaa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 98476 | 0.68 | 0.429728 |
Target: 5'- gGGCGGCCGUcCUCCGCgGGcucGGgcgGGUa -3' miRNA: 3'- -CCGCCGGCGaGGGGCGgCU---CCa--UCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 92362 | 0.68 | 0.429728 |
Target: 5'- aGGCggGGCagcaGCUCCCaauGCCcAGGUAGUa -3' miRNA: 3'- -CCG--CCGg---CGAGGGg--CGGcUCCAUCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 37546 | 0.69 | 0.396284 |
Target: 5'- cGCGcGCCGCUCCcgCCGCCGccaccgGGGUGcGUc -3' miRNA: 3'- cCGC-CGGCGAGG--GGCGGC------UCCAU-CAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 2659 | 0.69 | 0.388189 |
Target: 5'- aGCGGCgGCUCCCgccgCGCUGGGGa---- -3' miRNA: 3'- cCGCCGgCGAGGG----GCGGCUCCaucaa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 123237 | 0.69 | 0.387385 |
Target: 5'- aGCGGCCGCccaggcgcgggCCCCGCCcaucgcccgugacGAGGUgcgGGUg -3' miRNA: 3'- cCGCCGGCGa----------GGGGCGG-------------CUCCA---UCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 641 | 0.69 | 0.380203 |
Target: 5'- cGGCGGCCGCcagcgccgcgUCCCCggcGCCGAGuccUGGc- -3' miRNA: 3'- -CCGCCGGCG----------AGGGG---CGGCUCc--AUCaa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 119537 | 0.69 | 0.372328 |
Target: 5'- cGCGGCCGagcaaggCCCCGCCGcGGGgccgcaAGUg -3' miRNA: 3'- cCGCCGGCga-----GGGGCGGC-UCCa-----UCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 38626 | 0.69 | 0.364564 |
Target: 5'- cGCGGCCGagcCCgCCGCCGAcGGUgacGGUg -3' miRNA: 3'- cCGCCGGCga-GG-GGCGGCU-CCA---UCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 11927 | 0.7 | 0.349376 |
Target: 5'- cGGCGGCUGCggcggCCCgCGCCGcGGcGGc- -3' miRNA: 3'- -CCGCCGGCGa----GGG-GCGGCuCCaUCaa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 64518 | 0.7 | 0.349376 |
Target: 5'- cGCgGGCgGCUCCUCGUCGGGGggcaGGUc -3' miRNA: 3'- cCG-CCGgCGAGGGGCGGCUCCa---UCAa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 95744 | 0.7 | 0.341952 |
Target: 5'- cGGC-GCCGCcgCCgCCGCCGGGGgcGc- -3' miRNA: 3'- -CCGcCGGCGa-GG-GGCGGCUCCauCaa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 35988 | 0.7 | 0.341952 |
Target: 5'- cGGCGGCgGCUCCUgGCgGcGGUAa-- -3' miRNA: 3'- -CCGCCGgCGAGGGgCGgCuCCAUcaa -5' |
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23732 | 5' | -63.4 | NC_005261.1 | + | 28595 | 0.7 | 0.341952 |
Target: 5'- cGGCgGGCCGC-CCgCGCCGAGcUGGc- -3' miRNA: 3'- -CCG-CCGGCGaGGgGCGGCUCcAUCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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