Results 81 - 88 of 88 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23732 | 5' | -63.4 | NC_005261.1 | + | 2659 | 0.69 | 0.388189 |
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Target: 5'- aGCGGCgGCUCCCgccgCGCUGGGGa---- -3' miRNA: 3'- cCGCCGgCGAGGG----GCGGCUCCaucaa -5' |
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| 23732 | 5' | -63.4 | NC_005261.1 | + | 37546 | 0.69 | 0.396284 |
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Target: 5'- cGCGcGCCGCUCCcgCCGCCGccaccgGGGUGcGUc -3' miRNA: 3'- cCGC-CGGCGAGG--GGCGGC------UCCAU-CAa -5' |
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| 23732 | 5' | -63.4 | NC_005261.1 | + | 92362 | 0.68 | 0.429728 |
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Target: 5'- aGGCggGGCagcaGCUCCCaauGCCcAGGUAGUa -3' miRNA: 3'- -CCG--CCGg---CGAGGGg--CGGcUCCAUCAa -5' |
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| 23732 | 5' | -63.4 | NC_005261.1 | + | 98476 | 0.68 | 0.429728 |
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Target: 5'- gGGCGGCCGUcCUCCGCgGGcucGGgcgGGUa -3' miRNA: 3'- -CCGCCGGCGaGGGGCGgCU---CCa--UCAa -5' |
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| 23732 | 5' | -63.4 | NC_005261.1 | + | 98569 | 0.68 | 0.429728 |
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Target: 5'- gGGCGGCCGUcCUCCGCgGGcucGGgcgAGUa -3' miRNA: 3'- -CCGCCGGCGaGGGGCGgCU---CCa--UCAa -5' |
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| 23732 | 5' | -63.4 | NC_005261.1 | + | 30874 | 0.68 | 0.438346 |
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Target: 5'- aGGgGGCCGCcggCCCUGCCGcccgagcucGGGcUGGg- -3' miRNA: 3'- -CCgCCGGCGa--GGGGCGGC---------UCC-AUCaa -5' |
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| 23732 | 5' | -63.4 | NC_005261.1 | + | 16240 | 0.68 | 0.438346 |
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Target: 5'- gGGCGGUCGacgUCCgCGCCGGGGc---- -3' miRNA: 3'- -CCGCCGGCg--AGGgGCGGCUCCaucaa -5' |
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| 23732 | 5' | -63.4 | NC_005261.1 | + | 37302 | 0.67 | 0.482849 |
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Target: 5'- cGCGGaUCGCcCCCCGCaCGAGGa---- -3' miRNA: 3'- cCGCC-GGCGaGGGGCG-GCUCCaucaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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