miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23733 3' -55.7 NC_005261.1 + 31440 0.66 0.909414
Target:  5'- uGGcgGCGCCGCCcggCGA-GGACgagcgCCgGCg -3'
miRNA:   3'- -UCa-CGUGGUGGa--GCUaCCUGa----GGaCG- -5'
23733 3' -55.7 NC_005261.1 + 31921 0.66 0.909414
Target:  5'- cGGgGCGCCGCCgc--UGGGCUCUgccGCg -3'
miRNA:   3'- -UCaCGUGGUGGagcuACCUGAGGa--CG- -5'
23733 3' -55.7 NC_005261.1 + 69495 0.66 0.90318
Target:  5'- uGGUGCACCuguacGCCggCGgcGGGCUgCCggaGCu -3'
miRNA:   3'- -UCACGUGG-----UGGa-GCuaCCUGA-GGa--CG- -5'
23733 3' -55.7 NC_005261.1 + 135749 0.66 0.90318
Target:  5'- --cGCGCCucaGCCgcgCGGUGcGCUCCgGCg -3'
miRNA:   3'- ucaCGUGG---UGGa--GCUACcUGAGGaCG- -5'
23733 3' -55.7 NC_005261.1 + 133495 0.66 0.90062
Target:  5'- aAGUGCggcagcaACCGCCUCGGgaccguguucaccgUGGAcCUCUcgggGCg -3'
miRNA:   3'- -UCACG-------UGGUGGAGCU--------------ACCU-GAGGa---CG- -5'
23733 3' -55.7 NC_005261.1 + 36591 0.66 0.896709
Target:  5'- --cGCgGCCACCggGggGGggcagcGCUCCUGCg -3'
miRNA:   3'- ucaCG-UGGUGGagCuaCC------UGAGGACG- -5'
23733 3' -55.7 NC_005261.1 + 132908 0.66 0.890003
Target:  5'- cGG-GCGgCGCCgagCGgcGG-CUCCUGCc -3'
miRNA:   3'- -UCaCGUgGUGGa--GCuaCCuGAGGACG- -5'
23733 3' -55.7 NC_005261.1 + 31478 0.66 0.890003
Target:  5'- gAGUG-GCCGCCggugcgCGgcGGGCUCUcGCa -3'
miRNA:   3'- -UCACgUGGUGGa-----GCuaCCUGAGGaCG- -5'
23733 3' -55.7 NC_005261.1 + 67003 0.66 0.890003
Target:  5'- cGGUgGCagGCCACCUCGAUGuuuGACaggaCCUGg -3'
miRNA:   3'- -UCA-CG--UGGUGGAGCUAC---CUGa---GGACg -5'
23733 3' -55.7 NC_005261.1 + 17038 0.66 0.883065
Target:  5'- cGUaGCG-CACCUCGAcGGGCUgCUcGCg -3'
miRNA:   3'- uCA-CGUgGUGGAGCUaCCUGAgGA-CG- -5'
23733 3' -55.7 NC_005261.1 + 86800 0.66 0.883065
Target:  5'- cGUGCucaugGCCGCCUCGAUcGACacgCCgUGUc -3'
miRNA:   3'- uCACG-----UGGUGGAGCUAcCUGa--GG-ACG- -5'
23733 3' -55.7 NC_005261.1 + 70741 0.66 0.883065
Target:  5'- cGUGCGCCuCCUCGAgcaGG--UCCagGCg -3'
miRNA:   3'- uCACGUGGuGGAGCUa--CCugAGGa-CG- -5'
23733 3' -55.7 NC_005261.1 + 103383 0.66 0.8759
Target:  5'- --cGCGCCGCCgCGccGcGGCcgCCUGCg -3'
miRNA:   3'- ucaCGUGGUGGaGCuaC-CUGa-GGACG- -5'
23733 3' -55.7 NC_005261.1 + 64370 0.67 0.868513
Target:  5'- aGGUGCGCUcgGCCaUGuUGGucacgacCUCCUGCa -3'
miRNA:   3'- -UCACGUGG--UGGaGCuACCu------GAGGACG- -5'
23733 3' -55.7 NC_005261.1 + 68376 0.67 0.860909
Target:  5'- --gGCGUCGCCUCG--GGGCUCgUGCu -3'
miRNA:   3'- ucaCGUGGUGGAGCuaCCUGAGgACG- -5'
23733 3' -55.7 NC_005261.1 + 7908 0.67 0.860909
Target:  5'- --gGCGCCACCa-GAUGGcGCcugagcuccaUCCUGCu -3'
miRNA:   3'- ucaCGUGGUGGagCUACC-UG----------AGGACG- -5'
23733 3' -55.7 NC_005261.1 + 113747 0.67 0.853094
Target:  5'- aGGUGC-CCGCCUCccagaucAUGaACUCCUGg -3'
miRNA:   3'- -UCACGuGGUGGAGc------UACcUGAGGACg -5'
23733 3' -55.7 NC_005261.1 + 75747 0.67 0.853094
Target:  5'- uGGUGCGCCGCCUgCuGUGGAa--CgGCa -3'
miRNA:   3'- -UCACGUGGUGGA-GcUACCUgagGaCG- -5'
23733 3' -55.7 NC_005261.1 + 47005 0.67 0.853094
Target:  5'- --cGCGCCGCCgCGAUGcGGCggUCCaGCc -3'
miRNA:   3'- ucaCGUGGUGGaGCUAC-CUG--AGGaCG- -5'
23733 3' -55.7 NC_005261.1 + 99389 0.67 0.845076
Target:  5'- cGU-CugCACCUCGcUGGGCggCUGCc -3'
miRNA:   3'- uCAcGugGUGGAGCuACCUGagGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.