miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 3' -58.2 NC_005261.1 + 134217 0.66 0.825855
Target:  5'- gGUCG-CGGCGGCCGGcAGcGucgGCGUGGc -3'
miRNA:   3'- -CAGUaGCCGCCGGCUcUC-Cu--UGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 15708 0.66 0.825855
Target:  5'- -gCGUCGGCugGGUgGAcGGcGAACGCGAc -3'
miRNA:   3'- caGUAGCCG--CCGgCUcUC-CUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 58699 0.66 0.825855
Target:  5'- cGUCAgggCGcGCcGCUGAGAGGuGCGCc- -3'
miRNA:   3'- -CAGUa--GC-CGcCGGCUCUCCuUGCGcu -5'
23734 3' -58.2 NC_005261.1 + 93724 0.66 0.825855
Target:  5'- cGUCGUCGGCGGCgGcAGc---GCGCGc -3'
miRNA:   3'- -CAGUAGCCGCCGgC-UCuccuUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 127698 0.66 0.825855
Target:  5'- ----cCGGCGGCgCcGGAGGAgcuGCGCGu -3'
miRNA:   3'- caguaGCCGCCG-GcUCUCCU---UGCGCu -5'
23734 3' -58.2 NC_005261.1 + 91400 0.66 0.825855
Target:  5'- aUCGUCGcGCccGG-CGAGGacguGGAGCGCGAc -3'
miRNA:   3'- cAGUAGC-CG--CCgGCUCU----CCUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 54769 0.66 0.825855
Target:  5'- -cCAgugCGGCGGgCGAcAGGAcgGCGCGc -3'
miRNA:   3'- caGUa--GCCGCCgGCUcUCCU--UGCGCu -5'
23734 3' -58.2 NC_005261.1 + 94305 0.66 0.817413
Target:  5'- --aGUCGGCGaCCcAGGGGGGCGCc- -3'
miRNA:   3'- cagUAGCCGCcGGcUCUCCUUGCGcu -5'
23734 3' -58.2 NC_005261.1 + 97580 0.66 0.817413
Target:  5'- ---cUCGGUGGCgCGGGcGGAGCggGCGGa -3'
miRNA:   3'- caguAGCCGCCG-GCUCuCCUUG--CGCU- -5'
23734 3' -58.2 NC_005261.1 + 68081 0.66 0.817413
Target:  5'- gGUCGcccgCGGgGGCgGGGAGGc-CGUGAa -3'
miRNA:   3'- -CAGUa---GCCgCCGgCUCUCCuuGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 75825 0.66 0.81656
Target:  5'- ----cCGGCgcGGCCGcgcccggGGAGGGGCGCGc -3'
miRNA:   3'- caguaGCCG--CCGGC-------UCUCCUUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 98809 0.66 0.808807
Target:  5'- gGUCGcCGGCGGCgugccggaagaCGGGGGGGugGgCGu -3'
miRNA:   3'- -CAGUaGCCGCCG-----------GCUCUCCUugC-GCu -5'
23734 3' -58.2 NC_005261.1 + 127017 0.66 0.808807
Target:  5'- -gCAggCGGCGGcCCGAGcaGGGAGuCGuCGAa -3'
miRNA:   3'- caGUa-GCCGCC-GGCUC--UCCUU-GC-GCU- -5'
23734 3' -58.2 NC_005261.1 + 49263 0.66 0.808807
Target:  5'- -gCGUCGGCGcGCaCGuccgcGAGGAAgGCGc -3'
miRNA:   3'- caGUAGCCGC-CG-GCu----CUCCUUgCGCu -5'
23734 3' -58.2 NC_005261.1 + 34349 0.66 0.808807
Target:  5'- -----gGGCGGCCGAcGGGGccgggcgccGCGCGGc -3'
miRNA:   3'- caguagCCGCCGGCUcUCCU---------UGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 53452 0.66 0.800046
Target:  5'- cGUCGggaGGUcGCCGGGcGGGACGCa- -3'
miRNA:   3'- -CAGUag-CCGcCGGCUCuCCUUGCGcu -5'
23734 3' -58.2 NC_005261.1 + 107536 0.66 0.800046
Target:  5'- -gCGUCGGCGGCCaccagcacguccGAGAgcacGGcAGCgGCGAa -3'
miRNA:   3'- caGUAGCCGCCGG------------CUCU----CC-UUG-CGCU- -5'
23734 3' -58.2 NC_005261.1 + 69658 0.66 0.800046
Target:  5'- cGUCAacCGGCGGCUGGGGGuGGC-CGGc -3'
miRNA:   3'- -CAGUa-GCCGCCGGCUCUCcUUGcGCU- -5'
23734 3' -58.2 NC_005261.1 + 74855 0.66 0.791136
Target:  5'- ----gCGGCGcGCCGggcGGAGGAggcggACGCGGc -3'
miRNA:   3'- caguaGCCGC-CGGC---UCUCCU-----UGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 87876 0.66 0.791136
Target:  5'- -----aGGUGGCgGAGAGaGGCGCGGa -3'
miRNA:   3'- caguagCCGCCGgCUCUCcUUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.