miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 3' -58.2 NC_005261.1 + 34349 0.66 0.808807
Target:  5'- -----gGGCGGCCGAcGGGGccgggcgccGCGCGGc -3'
miRNA:   3'- caguagCCGCCGGCUcUCCU---------UGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 93724 0.66 0.825855
Target:  5'- cGUCGUCGGCGGCgGcAGc---GCGCGc -3'
miRNA:   3'- -CAGUAGCCGCCGgC-UCuccuUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 58025 0.67 0.782087
Target:  5'- -gCcgCGGCGGCagcuccaGGGAGCGCGGc -3'
miRNA:   3'- caGuaGCCGCCGgcuc---UCCUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 73166 0.67 0.744667
Target:  5'- cGUUGUUGcuCGGCCGGGGGGAGgGUGc -3'
miRNA:   3'- -CAGUAGCc-GCCGGCUCUCCUUgCGCu -5'
23734 3' -58.2 NC_005261.1 + 126789 0.67 0.744667
Target:  5'- -gCGUCuGCGucuGCCGAGAGcAGCGCGGc -3'
miRNA:   3'- caGUAGcCGC---CGGCUCUCcUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 101297 0.67 0.73505
Target:  5'- gGUCGUCGauGCGcGCCGuuAGcGggUGCGAg -3'
miRNA:   3'- -CAGUAGC--CGC-CGGCucUC-CuuGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 68 0.67 0.744667
Target:  5'- --aAUCGGCGcGCgCGGGGgcGGggUGCGGg -3'
miRNA:   3'- cagUAGCCGC-CG-GCUCU--CCuuGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 57188 0.67 0.73505
Target:  5'- --gGUCGGCGGgaaggggGGGGGGGGCGCGc -3'
miRNA:   3'- cagUAGCCGCCgg-----CUCUCCUUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 137751 0.67 0.744667
Target:  5'- --aAUCGGCGcGCgCGGGGgcGGggUGCGGg -3'
miRNA:   3'- cagUAGCCGC-CG-GCUCU--CCuuGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 96852 0.67 0.754188
Target:  5'- gGUCGaCGGgGGgCucGGGGGGCGCGGg -3'
miRNA:   3'- -CAGUaGCCgCCgGcuCUCCUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 71349 0.67 0.754188
Target:  5'- cGUCcUCGGUGagcGCCGAGA---GCGCGAg -3'
miRNA:   3'- -CAGuAGCCGC---CGGCUCUccuUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 117772 0.67 0.772907
Target:  5'- gGUCcggAUCGG-GGCgGGGAGGAgggAgGCGAa -3'
miRNA:   3'- -CAG---UAGCCgCCGgCUCUCCU---UgCGCU- -5'
23734 3' -58.2 NC_005261.1 + 115542 0.67 0.782087
Target:  5'- -gCAUCGGCGGCUGGuGcAGGucCGUGu -3'
miRNA:   3'- caGUAGCCGCCGGCU-C-UCCuuGCGCu -5'
23734 3' -58.2 NC_005261.1 + 59056 0.67 0.763604
Target:  5'- cUCAgcgCGcGCGGCCgcgGAGAGcGcGCGCGGg -3'
miRNA:   3'- cAGUa--GC-CGCCGG---CUCUC-CuUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 17644 0.67 0.763604
Target:  5'- --gAUCGcGaGGCCGAuGAGGAugGCGc -3'
miRNA:   3'- cagUAGC-CgCCGGCU-CUCCUugCGCu -5'
23734 3' -58.2 NC_005261.1 + 83020 0.67 0.763604
Target:  5'- cGUCGcCGGCGcccCCGGGAGGGcCGCu- -3'
miRNA:   3'- -CAGUaGCCGCc--GGCUCUCCUuGCGcu -5'
23734 3' -58.2 NC_005261.1 + 73595 0.67 0.763604
Target:  5'- -gCGgaggCGGCGGCCGcGAGc-GCGCGGc -3'
miRNA:   3'- caGUa---GCCGCCGGCuCUCcuUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 98346 0.67 0.754188
Target:  5'- uGUCGacgCGGgGGCgGGGGuGGGCGCGGg -3'
miRNA:   3'- -CAGUa--GCCgCCGgCUCUcCUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 97949 0.68 0.725346
Target:  5'- ----cCGGCGGCaaCGAGGGaGGugGCGGc -3'
miRNA:   3'- caguaGCCGCCG--GCUCUC-CUugCGCU- -5'
23734 3' -58.2 NC_005261.1 + 9103 0.68 0.705712
Target:  5'- cUCAcgUGGUGuGCCGAGAGGGcCGCc- -3'
miRNA:   3'- cAGUa-GCCGC-CGGCUCUCCUuGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.