Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23734 | 3' | -58.2 | NC_005261.1 | + | 5844 | 0.7 | 0.574152 |
Target: 5'- gGUUA-CGGCGGCCGAGAGaGGggucucgACGaCGGa -3' miRNA: 3'- -CAGUaGCCGCCGGCUCUC-CU-------UGC-GCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 29417 | 0.7 | 0.57515 |
Target: 5'- -aCG-CGGCGGCCGcGGGGccCGCGGc -3' miRNA: 3'- caGUaGCCGCCGGCuCUCCuuGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 80051 | 0.7 | 0.57515 |
Target: 5'- cGUCGccacuggCGGCGGgCGcGGGGGGCGUGGg -3' miRNA: 3'- -CAGUa------GCCGCCgGCuCUCCUUGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 128888 | 0.7 | 0.585154 |
Target: 5'- ----gCGGgGGCCGGGuGGGAgGCGGg -3' miRNA: 3'- caguaGCCgCCGGCUCuCCUUgCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 121635 | 0.7 | 0.605255 |
Target: 5'- ---cUCGGCGGCCGccgccGGcGAGCGCGGg -3' miRNA: 3'- caguAGCCGCCGGCuc---UC-CUUGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 101428 | 0.69 | 0.615337 |
Target: 5'- -aCGUCGGCcGCCGAG-GcGGCGCGGu -3' miRNA: 3'- caGUAGCCGcCGGCUCuCcUUGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 114371 | 0.69 | 0.625432 |
Target: 5'- --aGUCGGUGGCCGAGAaGuACGUGc -3' miRNA: 3'- cagUAGCCGCCGGCUCUcCuUGCGCu -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 74657 | 0.69 | 0.64563 |
Target: 5'- cGUCuUCGcGCaGGCCGGGGacGcGGACGCGAc -3' miRNA: 3'- -CAGuAGC-CG-CCGGCUCU--C-CUUGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 15205 | 0.69 | 0.665786 |
Target: 5'- -cCAUCGcGCGGUCGuAGAGGcuCGcCGAg -3' miRNA: 3'- caGUAGC-CGCCGGC-UCUCCuuGC-GCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 58291 | 0.69 | 0.665786 |
Target: 5'- ----cCGGCGcGCCGGGGGGcGCGgGGa -3' miRNA: 3'- caguaGCCGC-CGGCUCUCCuUGCgCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 104379 | 0.69 | 0.665786 |
Target: 5'- -cCGcCGGCcggaGGCCGAGAGGcGCGCc- -3' miRNA: 3'- caGUaGCCG----CCGGCUCUCCuUGCGcu -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 92224 | 0.68 | 0.675828 |
Target: 5'- cGUCGUCGGCcccGCCGAGc---GCGCGGa -3' miRNA: 3'- -CAGUAGCCGc--CGGCUCuccuUGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 74278 | 0.68 | 0.675828 |
Target: 5'- cGUCcgCGGCGGgCGGGgcggucgccgccGGGcagcaGACGCGAg -3' miRNA: 3'- -CAGuaGCCGCCgGCUC------------UCC-----UUGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 11429 | 0.68 | 0.675828 |
Target: 5'- -----aGGCGGgCGGGGGGGGCgGCGGa -3' miRNA: 3'- caguagCCGCCgGCUCUCCUUG-CGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 2608 | 0.68 | 0.682837 |
Target: 5'- -cCGUCGGCGGCgGGGccgccgggcggcauGGGGcccagcACGCGGg -3' miRNA: 3'- caGUAGCCGCCGgCUC--------------UCCU------UGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 17483 | 0.68 | 0.6958 |
Target: 5'- -----gGGCGcGCCGGGGGGuccuaGACGCGGa -3' miRNA: 3'- caguagCCGC-CGGCUCUCC-----UUGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 118353 | 0.68 | 0.6958 |
Target: 5'- cUCcUCGGCcucucGGCCGGGcgcuGGGGCGCGc -3' miRNA: 3'- cAGuAGCCG-----CCGGCUCu---CCUUGCGCu -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 15022 | 0.68 | 0.705712 |
Target: 5'- aGUUGUCGGCGgguGCCGGGGGcGuAGCGgGGg -3' miRNA: 3'- -CAGUAGCCGC---CGGCUCUC-C-UUGCgCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 89835 | 0.68 | 0.705712 |
Target: 5'- uUCG-CGGCcgGGCCG-GAGGGcCGCGGc -3' miRNA: 3'- cAGUaGCCG--CCGGCuCUCCUuGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 9103 | 0.68 | 0.705712 |
Target: 5'- cUCAcgUGGUGuGCCGAGAGGGcCGCc- -3' miRNA: 3'- cAGUa-GCCGC-CGGCUCUCCUuGCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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