miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 3' -58.2 NC_005261.1 + 68 0.67 0.744667
Target:  5'- --aAUCGGCGcGCgCGGGGgcGGggUGCGGg -3'
miRNA:   3'- cagUAGCCGC-CG-GCUCU--CCuuGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 2608 0.68 0.682837
Target:  5'- -cCGUCGGCGGCgGGGccgccgggcggcauGGGGcccagcACGCGGg -3'
miRNA:   3'- caGUAGCCGCCGgCUC--------------UCCU------UGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 2797 0.79 0.194999
Target:  5'- -cCGcCGGCGGCCGGGAGGGGCcggGCGGc -3'
miRNA:   3'- caGUaGCCGCCGGCUCUCCUUG---CGCU- -5'
23734 3' -58.2 NC_005261.1 + 5844 0.7 0.574152
Target:  5'- gGUUA-CGGCGGCCGAGAGaGGggucucgACGaCGGa -3'
miRNA:   3'- -CAGUaGCCGCCGGCUCUC-CU-------UGC-GCU- -5'
23734 3' -58.2 NC_005261.1 + 9103 0.68 0.705712
Target:  5'- cUCAcgUGGUGuGCCGAGAGGGcCGCc- -3'
miRNA:   3'- cAGUa-GCCGC-CGGCUCUCCUuGCGcu -5'
23734 3' -58.2 NC_005261.1 + 11429 0.68 0.675828
Target:  5'- -----aGGCGGgCGGGGGGGGCgGCGGa -3'
miRNA:   3'- caguagCCGCCgGCUCUCCUUG-CGCU- -5'
23734 3' -58.2 NC_005261.1 + 12575 0.73 0.398347
Target:  5'- -aCG-CGG-GGCCGAGAGGGGCGCc- -3'
miRNA:   3'- caGUaGCCgCCGGCUCUCCUUGCGcu -5'
23734 3' -58.2 NC_005261.1 + 13118 0.77 0.236768
Target:  5'- -gCGUCGGCGGCCGcGGGGcGCGUGu -3'
miRNA:   3'- caGUAGCCGCCGGCuCUCCuUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 15022 0.68 0.705712
Target:  5'- aGUUGUCGGCGgguGCCGGGGGcGuAGCGgGGg -3'
miRNA:   3'- -CAGUAGCCGC---CGGCUCUC-C-UUGCgCU- -5'
23734 3' -58.2 NC_005261.1 + 15205 0.69 0.665786
Target:  5'- -cCAUCGcGCGGUCGuAGAGGcuCGcCGAg -3'
miRNA:   3'- caGUAGC-CGCCGGC-UCUCCuuGC-GCU- -5'
23734 3' -58.2 NC_005261.1 + 15708 0.66 0.825855
Target:  5'- -gCGUCGGCugGGUgGAcGGcGAACGCGAc -3'
miRNA:   3'- caGUAGCCG--CCGgCUcUC-CUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 17483 0.68 0.6958
Target:  5'- -----gGGCGcGCCGGGGGGuccuaGACGCGGa -3'
miRNA:   3'- caguagCCGC-CGGCUCUCC-----UUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 17644 0.67 0.763604
Target:  5'- --gAUCGcGaGGCCGAuGAGGAugGCGc -3'
miRNA:   3'- cagUAGC-CgCCGGCU-CUCCUugCGCu -5'
23734 3' -58.2 NC_005261.1 + 19446 0.71 0.5454
Target:  5'- cGUCGUCGG-GGCCGuuGAGGAagACGUu- -3'
miRNA:   3'- -CAGUAGCCgCCGGCu-CUCCU--UGCGcu -5'
23734 3' -58.2 NC_005261.1 + 24391 0.7 0.554278
Target:  5'- cUCGUCGGCGGCgGGGcgguccuGGGGGCuCGGa -3'
miRNA:   3'- cAGUAGCCGCCGgCUC-------UCCUUGcGCU- -5'
23734 3' -58.2 NC_005261.1 + 29417 0.7 0.57515
Target:  5'- -aCG-CGGCGGCCGcGGGGccCGCGGc -3'
miRNA:   3'- caGUaGCCGCCGGCuCUCCuuGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 32920 0.72 0.468938
Target:  5'- cGUgGggggCGGCGGgCGGGGGGGGgGCGGg -3'
miRNA:   3'- -CAgUa---GCCGCCgGCUCUCCUUgCGCU- -5'
23734 3' -58.2 NC_005261.1 + 33816 0.74 0.373685
Target:  5'- uGUCuuUgGGCGGCCGGGGGG--CGCGGg -3'
miRNA:   3'- -CAGu-AgCCGCCGGCUCUCCuuGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 34282 0.76 0.28578
Target:  5'- cUCA-CGGCGGCCGGcGGGGACGCc- -3'
miRNA:   3'- cAGUaGCCGCCGGCUcUCCUUGCGcu -5'
23734 3' -58.2 NC_005261.1 + 34349 0.66 0.808807
Target:  5'- -----gGGCGGCCGAcGGGGccgggcgccGCGCGGc -3'
miRNA:   3'- caguagCCGCCGGCUcUCCU---------UGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.