miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 3' -58.2 NC_005261.1 + 38938 0.72 0.450673
Target:  5'- ----cCGGCGGCCGGGcGGGcCGCGGc -3'
miRNA:   3'- caguaGCCGCCGGCUCuCCUuGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 39371 0.8 0.159818
Target:  5'- cUCAUCGGCGGCCG--GGGAGgGCGGc -3'
miRNA:   3'- cAGUAGCCGCCGGCucUCCUUgCGCU- -5'
23734 3' -58.2 NC_005261.1 + 47155 0.82 0.127167
Target:  5'- -gCGUCGGCGGCCGAGAccaccagcGGGACGCc- -3'
miRNA:   3'- caGUAGCCGCCGGCUCU--------CCUUGCGcu -5'
23734 3' -58.2 NC_005261.1 + 49263 0.66 0.808807
Target:  5'- -gCGUCGGCGcGCaCGuccgcGAGGAAgGCGc -3'
miRNA:   3'- caGUAGCCGC-CG-GCu----CUCCUUgCGCu -5'
23734 3' -58.2 NC_005261.1 + 53452 0.66 0.800046
Target:  5'- cGUCGggaGGUcGCCGGGcGGGACGCa- -3'
miRNA:   3'- -CAGUag-CCGcCGGCUCuCCUUGCGcu -5'
23734 3' -58.2 NC_005261.1 + 54769 0.66 0.825855
Target:  5'- -cCAgugCGGCGGgCGAcAGGAcgGCGCGc -3'
miRNA:   3'- caGUa--GCCGCCgGCUcUCCU--UGCGCu -5'
23734 3' -58.2 NC_005261.1 + 57188 0.67 0.73505
Target:  5'- --gGUCGGCGGgaaggggGGGGGGGGCGCGc -3'
miRNA:   3'- cagUAGCCGCCgg-----CUCUCCUUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 58025 0.67 0.782087
Target:  5'- -gCcgCGGCGGCagcuccaGGGAGCGCGGc -3'
miRNA:   3'- caGuaGCCGCCGgcuc---UCCUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 58291 0.69 0.665786
Target:  5'- ----cCGGCGcGCCGGGGGGcGCGgGGa -3'
miRNA:   3'- caguaGCCGC-CGGCUCUCCuUGCgCU- -5'
23734 3' -58.2 NC_005261.1 + 58564 0.66 0.791136
Target:  5'- -cCGUC-GUGGCCGcGAGcggcGAGCGCGAg -3'
miRNA:   3'- caGUAGcCGCCGGCuCUC----CUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 58699 0.66 0.825855
Target:  5'- cGUCAgggCGcGCcGCUGAGAGGuGCGCc- -3'
miRNA:   3'- -CAGUa--GC-CGcCGGCUCUCCuUGCGcu -5'
23734 3' -58.2 NC_005261.1 + 59056 0.67 0.763604
Target:  5'- cUCAgcgCGcGCGGCCgcgGAGAGcGcGCGCGGg -3'
miRNA:   3'- cAGUa--GC-CGCCGG---CUCUC-CuUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 60837 0.77 0.242487
Target:  5'- aUCAUCGGCGGCgGcGAGGucGCGCGc -3'
miRNA:   3'- cAGUAGCCGCCGgCuCUCCu-UGCGCu -5'
23734 3' -58.2 NC_005261.1 + 68081 0.66 0.817413
Target:  5'- gGUCGcccgCGGgGGCgGGGAGGc-CGUGAa -3'
miRNA:   3'- -CAGUa---GCCgCCGgCUCUCCuuGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 69658 0.66 0.800046
Target:  5'- cGUCAacCGGCGGCUGGGGGuGGC-CGGc -3'
miRNA:   3'- -CAGUa-GCCGCCGGCUCUCcUUGcGCU- -5'
23734 3' -58.2 NC_005261.1 + 70341 0.68 0.725346
Target:  5'- -gCGUCGaGCgGGCCGGGGaccGGGAgGCGGc -3'
miRNA:   3'- caGUAGC-CG-CCGGCUCU---CCUUgCGCU- -5'
23734 3' -58.2 NC_005261.1 + 71349 0.67 0.754188
Target:  5'- cGUCcUCGGUGagcGCCGAGA---GCGCGAg -3'
miRNA:   3'- -CAGuAGCCGC---CGGCUCUccuUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 73166 0.67 0.744667
Target:  5'- cGUUGUUGcuCGGCCGGGGGGAGgGUGc -3'
miRNA:   3'- -CAGUAGCc-GCCGGCUCUCCUUgCGCu -5'
23734 3' -58.2 NC_005261.1 + 73595 0.67 0.763604
Target:  5'- -gCGgaggCGGCGGCCGcGAGc-GCGCGGc -3'
miRNA:   3'- caGUa---GCCGCCGGCuCUCcuUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 74278 0.68 0.675828
Target:  5'- cGUCcgCGGCGGgCGGGgcggucgccgccGGGcagcaGACGCGAg -3'
miRNA:   3'- -CAGuaGCCGCCgGCUC------------UCC-----UUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.