miRNA display CGI


Results 41 - 60 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 3' -58.2 NC_005261.1 + 74657 0.69 0.64563
Target:  5'- cGUCuUCGcGCaGGCCGGGGacGcGGACGCGAc -3'
miRNA:   3'- -CAGuAGC-CG-CCGGCUCU--C-CUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 74855 0.66 0.791136
Target:  5'- ----gCGGCGcGCCGggcGGAGGAggcggACGCGGc -3'
miRNA:   3'- caguaGCCGC-CGGC---UCUCCU-----UGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 74898 0.71 0.506555
Target:  5'- --aGUCGGCGGcCCGcgcuggccgcgcGGGGGAGgGCGAg -3'
miRNA:   3'- cagUAGCCGCC-GGC------------UCUCCUUgCGCU- -5'
23734 3' -58.2 NC_005261.1 + 75825 0.66 0.81656
Target:  5'- ----cCGGCgcGGCCGcgcccggGGAGGGGCGCGc -3'
miRNA:   3'- caguaGCCG--CCGGC-------UCUCCUUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 80051 0.7 0.57515
Target:  5'- cGUCGccacuggCGGCGGgCGcGGGGGGCGUGGg -3'
miRNA:   3'- -CAGUa------GCCGCCgGCuCUCCUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 81334 0.7 0.565186
Target:  5'- cGUCGUCGG-GGCCGucGGcGGGGCGgGGg -3'
miRNA:   3'- -CAGUAGCCgCCGGC--UCuCCUUGCgCU- -5'
23734 3' -58.2 NC_005261.1 + 83020 0.67 0.763604
Target:  5'- cGUCGcCGGCGcccCCGGGAGGGcCGCu- -3'
miRNA:   3'- -CAGUaGCCGCc--GGCUCUCCUuGCGcu -5'
23734 3' -58.2 NC_005261.1 + 84950 0.71 0.516162
Target:  5'- cUCcUCGGCGGCCGccGAGGcgucgGGCGCGu -3'
miRNA:   3'- cAGuAGCCGCCGGCu-CUCC-----UUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 86101 0.74 0.373685
Target:  5'- cUCGUCGGCGcCCGGGcgucGGAGCGCGc -3'
miRNA:   3'- cAGUAGCCGCcGGCUCu---CCUUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 87876 0.66 0.791136
Target:  5'- -----aGGUGGCgGAGAGaGGCGCGGa -3'
miRNA:   3'- caguagCCGCCGgCUCUCcUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 89835 0.68 0.705712
Target:  5'- uUCG-CGGCcgGGCCG-GAGGGcCGCGGc -3'
miRNA:   3'- cAGUaGCCG--CCGGCuCUCCUuGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 91400 0.66 0.825855
Target:  5'- aUCGUCGcGCccGG-CGAGGacguGGAGCGCGAc -3'
miRNA:   3'- cAGUAGC-CG--CCgGCUCU----CCUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 92224 0.68 0.675828
Target:  5'- cGUCGUCGGCcccGCCGAGc---GCGCGGa -3'
miRNA:   3'- -CAGUAGCCGc--CGGCUCuccuUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 93562 0.71 0.5454
Target:  5'- gGUCGaCGGCGGUgcGGcGGGACGCGAu -3'
miRNA:   3'- -CAGUaGCCGCCGgcUCuCCUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 93724 0.66 0.825855
Target:  5'- cGUCGUCGGCGGCgGcAGc---GCGCGc -3'
miRNA:   3'- -CAGUAGCCGCCGgC-UCuccuUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 94305 0.66 0.817413
Target:  5'- --aGUCGGCGaCCcAGGGGGGCGCc- -3'
miRNA:   3'- cagUAGCCGCcGGcUCUCCUUGCGcu -5'
23734 3' -58.2 NC_005261.1 + 96852 0.67 0.754188
Target:  5'- gGUCGaCGGgGGgCucGGGGGGCGCGGg -3'
miRNA:   3'- -CAGUaGCCgCCgGcuCUCCUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 97580 0.66 0.817413
Target:  5'- ---cUCGGUGGCgCGGGcGGAGCggGCGGa -3'
miRNA:   3'- caguAGCCGCCG-GCUCuCCUUG--CGCU- -5'
23734 3' -58.2 NC_005261.1 + 97949 0.68 0.725346
Target:  5'- ----cCGGCGGCaaCGAGGGaGGugGCGGc -3'
miRNA:   3'- caguaGCCGCCG--GCUCUC-CUugCGCU- -5'
23734 3' -58.2 NC_005261.1 + 98346 0.67 0.754188
Target:  5'- uGUCGacgCGGgGGCgGGGGuGGGCGCGGg -3'
miRNA:   3'- -CAGUa--GCCgCCGgCUCUcCUUGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.