miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 3' -58.2 NC_005261.1 + 137751 0.67 0.744667
Target:  5'- --aAUCGGCGcGCgCGGGGgcGGggUGCGGg -3'
miRNA:   3'- cagUAGCCGC-CG-GCUCU--CCuuGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 137000 0.72 0.450673
Target:  5'- gGUCgAUCGuGCGGCCG-GAG-AGCGCGGc -3'
miRNA:   3'- -CAG-UAGC-CGCCGGCuCUCcUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 134217 0.66 0.825855
Target:  5'- gGUCG-CGGCGGCCGGcAGcGucgGCGUGGc -3'
miRNA:   3'- -CAGUaGCCGCCGGCUcUC-Cu--UGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 128888 0.7 0.585154
Target:  5'- ----gCGGgGGCCGGGuGGGAgGCGGg -3'
miRNA:   3'- caguaGCCgCCGGCUCuCCUUgCGCU- -5'
23734 3' -58.2 NC_005261.1 + 128449 0.68 0.724371
Target:  5'- -aCAgcgCGGCGGUCGcGAGcacgacgagcagcGAGCGCGAc -3'
miRNA:   3'- caGUa--GCCGCCGGCuCUC-------------CUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 127698 0.66 0.825855
Target:  5'- ----cCGGCGGCgCcGGAGGAgcuGCGCGu -3'
miRNA:   3'- caguaGCCGCCG-GcUCUCCU---UGCGCu -5'
23734 3' -58.2 NC_005261.1 + 127641 0.72 0.450673
Target:  5'- -aCggCGGCGgcGCCGGGGGGcGCGCGGg -3'
miRNA:   3'- caGuaGCCGC--CGGCUCUCCuUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 127378 0.76 0.28578
Target:  5'- uGUCGUUGGCGGCgGcGAGGAGCcCGGc -3'
miRNA:   3'- -CAGUAGCCGCCGgCuCUCCUUGcGCU- -5'
23734 3' -58.2 NC_005261.1 + 127017 0.66 0.808807
Target:  5'- -gCAggCGGCGGcCCGAGcaGGGAGuCGuCGAa -3'
miRNA:   3'- caGUa-GCCGCC-GGCUC--UCCUU-GC-GCU- -5'
23734 3' -58.2 NC_005261.1 + 126789 0.67 0.744667
Target:  5'- -gCGUCuGCGucuGCCGAGAGcAGCGCGGc -3'
miRNA:   3'- caGUAGcCGC---CGGCUCUCcUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 121792 0.66 0.791136
Target:  5'- ----cCGGCgGGCUGGGcaGGGGGCGCGu -3'
miRNA:   3'- caguaGCCG-CCGGCUC--UCCUUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 121635 0.7 0.605255
Target:  5'- ---cUCGGCGGCCGccgccGGcGAGCGCGGg -3'
miRNA:   3'- caguAGCCGCCGGCuc---UC-CUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 118353 0.68 0.6958
Target:  5'- cUCcUCGGCcucucGGCCGGGcgcuGGGGCGCGc -3'
miRNA:   3'- cAGuAGCCG-----CCGGCUCu---CCUUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 117772 0.67 0.772907
Target:  5'- gGUCcggAUCGG-GGCgGGGAGGAgggAgGCGAa -3'
miRNA:   3'- -CAG---UAGCCgCCGgCUCUCCU---UgCGCU- -5'
23734 3' -58.2 NC_005261.1 + 115542 0.67 0.782087
Target:  5'- -gCAUCGGCGGCUGGuGcAGGucCGUGu -3'
miRNA:   3'- caGUAGCCGCCGGCU-C-UCCuuGCGCu -5'
23734 3' -58.2 NC_005261.1 + 114371 0.69 0.625432
Target:  5'- --aGUCGGUGGCCGAGAaGuACGUGc -3'
miRNA:   3'- cagUAGCCGCCGGCUCUcCuUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 107536 0.66 0.800046
Target:  5'- -gCGUCGGCGGCCaccagcacguccGAGAgcacGGcAGCgGCGAa -3'
miRNA:   3'- caGUAGCCGCCGG------------CUCU----CC-UUG-CGCU- -5'
23734 3' -58.2 NC_005261.1 + 104379 0.69 0.665786
Target:  5'- -cCGcCGGCcggaGGCCGAGAGGcGCGCc- -3'
miRNA:   3'- caGUaGCCG----CCGGCUCUCCuUGCGcu -5'
23734 3' -58.2 NC_005261.1 + 101428 0.69 0.615337
Target:  5'- -aCGUCGGCcGCCGAG-GcGGCGCGGu -3'
miRNA:   3'- caGUAGCCGcCGGCUCuCcUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 101297 0.67 0.73505
Target:  5'- gGUCGUCGauGCGcGCCGuuAGcGggUGCGAg -3'
miRNA:   3'- -CAGUAGC--CGC-CGGCucUC-CuuGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.