miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 3' -58.2 NC_005261.1 + 91400 0.66 0.825855
Target:  5'- aUCGUCGcGCccGG-CGAGGacguGGAGCGCGAc -3'
miRNA:   3'- cAGUAGC-CG--CCgGCUCU----CCUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 38938 0.72 0.450673
Target:  5'- ----cCGGCGGCCGGGcGGGcCGCGGc -3'
miRNA:   3'- caguaGCCGCCGGCUCuCCUuGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 32920 0.72 0.468938
Target:  5'- cGUgGggggCGGCGGgCGGGGGGGGgGCGGg -3'
miRNA:   3'- -CAgUa---GCCGCCgGCUCUCCUUgCGCU- -5'
23734 3' -58.2 NC_005261.1 + 74898 0.71 0.506555
Target:  5'- --aGUCGGCGGcCCGcgcuggccgcgcGGGGGAGgGCGAg -3'
miRNA:   3'- cagUAGCCGCC-GGC------------UCUCCUUgCGCU- -5'
23734 3' -58.2 NC_005261.1 + 84950 0.71 0.516162
Target:  5'- cUCcUCGGCGGCCGccGAGGcgucgGGCGCGu -3'
miRNA:   3'- cAGuAGCCGCCGGCu-CUCC-----UUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 93562 0.71 0.5454
Target:  5'- gGUCGaCGGCGGUgcGGcGGGACGCGAu -3'
miRNA:   3'- -CAGUaGCCGCCGgcUCuCCUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 19446 0.71 0.5454
Target:  5'- cGUCGUCGG-GGCCGuuGAGGAagACGUu- -3'
miRNA:   3'- -CAGUAGCCgCCGGCu-CUCCU--UGCGcu -5'
23734 3' -58.2 NC_005261.1 + 24391 0.7 0.554278
Target:  5'- cUCGUCGGCGGCgGGGcgguccuGGGGGCuCGGa -3'
miRNA:   3'- cAGUAGCCGCCGgCUC-------UCCUUGcGCU- -5'
23734 3' -58.2 NC_005261.1 + 81334 0.7 0.565186
Target:  5'- cGUCGUCGG-GGCCGucGGcGGGGCGgGGg -3'
miRNA:   3'- -CAGUAGCCgCCGGC--UCuCCUUGCgCU- -5'
23734 3' -58.2 NC_005261.1 + 127641 0.72 0.450673
Target:  5'- -aCggCGGCGgcGCCGGGGGGcGCGCGGg -3'
miRNA:   3'- caGuaGCCGC--CGGCUCUCCuUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 137000 0.72 0.450673
Target:  5'- gGUCgAUCGuGCGGCCG-GAG-AGCGCGGc -3'
miRNA:   3'- -CAG-UAGC-CGCCGGCuCUCcUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 12575 0.73 0.398347
Target:  5'- -aCG-CGG-GGCCGAGAGGGGCGCc- -3'
miRNA:   3'- caGUaGCCgCCGGCUCUCCUUGCGcu -5'
23734 3' -58.2 NC_005261.1 + 39371 0.8 0.159818
Target:  5'- cUCAUCGGCGGCCG--GGGAGgGCGGc -3'
miRNA:   3'- cAGUAGCCGCCGGCucUCCUUgCGCU- -5'
23734 3' -58.2 NC_005261.1 + 2797 0.79 0.194999
Target:  5'- -cCGcCGGCGGCCGGGAGGGGCcggGCGGc -3'
miRNA:   3'- caGUaGCCGCCGGCUCUCCUUG---CGCU- -5'
23734 3' -58.2 NC_005261.1 + 13118 0.77 0.236768
Target:  5'- -gCGUCGGCGGCCGcGGGGcGCGUGu -3'
miRNA:   3'- caGUAGCCGCCGGCuCUCCuUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 60837 0.77 0.242487
Target:  5'- aUCAUCGGCGGCgGcGAGGucGCGCGc -3'
miRNA:   3'- cAGUAGCCGCCGgCuCUCCu-UGCGCu -5'
23734 3' -58.2 NC_005261.1 + 34282 0.76 0.28578
Target:  5'- cUCA-CGGCGGCCGGcGGGGACGCc- -3'
miRNA:   3'- cAGUaGCCGCCGGCUcUCCUUGCGcu -5'
23734 3' -58.2 NC_005261.1 + 127378 0.76 0.28578
Target:  5'- uGUCGUUGGCGGCgGcGAGGAGCcCGGc -3'
miRNA:   3'- -CAGUAGCCGCCGgCuCUCCUUGcGCU- -5'
23734 3' -58.2 NC_005261.1 + 33816 0.74 0.373685
Target:  5'- uGUCuuUgGGCGGCCGGGGGG--CGCGGg -3'
miRNA:   3'- -CAGu-AgCCGCCGGCUCUCCuuGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 86101 0.74 0.373685
Target:  5'- cUCGUCGGCGcCCGGGcgucGGAGCGCGc -3'
miRNA:   3'- cAGUAGCCGCcGGCUCu---CCUUGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.