miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 3' -58.2 NC_005261.1 + 34282 0.76 0.28578
Target:  5'- cUCA-CGGCGGCCGGcGGGGACGCc- -3'
miRNA:   3'- cAGUaGCCGCCGGCUcUCCUUGCGcu -5'
23734 3' -58.2 NC_005261.1 + 60837 0.77 0.242487
Target:  5'- aUCAUCGGCGGCgGcGAGGucGCGCGc -3'
miRNA:   3'- cAGUAGCCGCCGgCuCUCCu-UGCGCu -5'
23734 3' -58.2 NC_005261.1 + 13118 0.77 0.236768
Target:  5'- -gCGUCGGCGGCCGcGGGGcGCGUGu -3'
miRNA:   3'- caGUAGCCGCCGGCuCUCCuUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 2797 0.79 0.194999
Target:  5'- -cCGcCGGCGGCCGGGAGGGGCcggGCGGc -3'
miRNA:   3'- caGUaGCCGCCGGCUCUCCUUG---CGCU- -5'
23734 3' -58.2 NC_005261.1 + 39371 0.8 0.159818
Target:  5'- cUCAUCGGCGGCCG--GGGAGgGCGGc -3'
miRNA:   3'- cAGUAGCCGCCGGCucUCCUUgCGCU- -5'
23734 3' -58.2 NC_005261.1 + 74898 0.71 0.506555
Target:  5'- --aGUCGGCGGcCCGcgcuggccgcgcGGGGGAGgGCGAg -3'
miRNA:   3'- cagUAGCCGCC-GGC------------UCUCCUUgCGCU- -5'
23734 3' -58.2 NC_005261.1 + 84950 0.71 0.516162
Target:  5'- cUCcUCGGCGGCCGccGAGGcgucgGGCGCGu -3'
miRNA:   3'- cAGuAGCCGCCGGCu-CUCC-----UUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 15205 0.69 0.665786
Target:  5'- -cCAUCGcGCGGUCGuAGAGGcuCGcCGAg -3'
miRNA:   3'- caGUAGC-CGCCGGC-UCUCCuuGC-GCU- -5'
23734 3' -58.2 NC_005261.1 + 74657 0.69 0.64563
Target:  5'- cGUCuUCGcGCaGGCCGGGGacGcGGACGCGAc -3'
miRNA:   3'- -CAGuAGC-CG-CCGGCUCU--C-CUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 114371 0.69 0.625432
Target:  5'- --aGUCGGUGGCCGAGAaGuACGUGc -3'
miRNA:   3'- cagUAGCCGCCGGCUCUcCuUGCGCu -5'
23734 3' -58.2 NC_005261.1 + 101428 0.69 0.615337
Target:  5'- -aCGUCGGCcGCCGAG-GcGGCGCGGu -3'
miRNA:   3'- caGUAGCCGcCGGCUCuCcUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 121635 0.7 0.605255
Target:  5'- ---cUCGGCGGCCGccgccGGcGAGCGCGGg -3'
miRNA:   3'- caguAGCCGCCGGCuc---UC-CUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 128888 0.7 0.585154
Target:  5'- ----gCGGgGGCCGGGuGGGAgGCGGg -3'
miRNA:   3'- caguaGCCgCCGGCUCuCCUUgCGCU- -5'
23734 3' -58.2 NC_005261.1 + 80051 0.7 0.57515
Target:  5'- cGUCGccacuggCGGCGGgCGcGGGGGGCGUGGg -3'
miRNA:   3'- -CAGUa------GCCGCCgGCuCUCCUUGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 29417 0.7 0.57515
Target:  5'- -aCG-CGGCGGCCGcGGGGccCGCGGc -3'
miRNA:   3'- caGUaGCCGCCGGCuCUCCuuGCGCU- -5'
23734 3' -58.2 NC_005261.1 + 5844 0.7 0.574152
Target:  5'- gGUUA-CGGCGGCCGAGAGaGGggucucgACGaCGGa -3'
miRNA:   3'- -CAGUaGCCGCCGGCUCUC-CU-------UGC-GCU- -5'
23734 3' -58.2 NC_005261.1 + 81334 0.7 0.565186
Target:  5'- cGUCGUCGG-GGCCGucGGcGGGGCGgGGg -3'
miRNA:   3'- -CAGUAGCCgCCGGC--UCuCCUUGCgCU- -5'
23734 3' -58.2 NC_005261.1 + 24391 0.7 0.554278
Target:  5'- cUCGUCGGCGGCgGGGcgguccuGGGGGCuCGGa -3'
miRNA:   3'- cAGUAGCCGCCGgCUC-------UCCUUGcGCU- -5'
23734 3' -58.2 NC_005261.1 + 19446 0.71 0.5454
Target:  5'- cGUCGUCGG-GGCCGuuGAGGAagACGUu- -3'
miRNA:   3'- -CAGUAGCCgCCGGCu-CUCCU--UGCGcu -5'
23734 3' -58.2 NC_005261.1 + 93562 0.71 0.5454
Target:  5'- gGUCGaCGGCGGUgcGGcGGGACGCGAu -3'
miRNA:   3'- -CAGUaGCCGCCGgcUCuCCUUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.