Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23734 | 3' | -58.2 | NC_005261.1 | + | 91400 | 0.66 | 0.825855 |
Target: 5'- aUCGUCGcGCccGG-CGAGGacguGGAGCGCGAc -3' miRNA: 3'- cAGUAGC-CG--CCgGCUCU----CCUUGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 38938 | 0.72 | 0.450673 |
Target: 5'- ----cCGGCGGCCGGGcGGGcCGCGGc -3' miRNA: 3'- caguaGCCGCCGGCUCuCCUuGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 32920 | 0.72 | 0.468938 |
Target: 5'- cGUgGggggCGGCGGgCGGGGGGGGgGCGGg -3' miRNA: 3'- -CAgUa---GCCGCCgGCUCUCCUUgCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 74898 | 0.71 | 0.506555 |
Target: 5'- --aGUCGGCGGcCCGcgcuggccgcgcGGGGGAGgGCGAg -3' miRNA: 3'- cagUAGCCGCC-GGC------------UCUCCUUgCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 84950 | 0.71 | 0.516162 |
Target: 5'- cUCcUCGGCGGCCGccGAGGcgucgGGCGCGu -3' miRNA: 3'- cAGuAGCCGCCGGCu-CUCC-----UUGCGCu -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 93562 | 0.71 | 0.5454 |
Target: 5'- gGUCGaCGGCGGUgcGGcGGGACGCGAu -3' miRNA: 3'- -CAGUaGCCGCCGgcUCuCCUUGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 19446 | 0.71 | 0.5454 |
Target: 5'- cGUCGUCGG-GGCCGuuGAGGAagACGUu- -3' miRNA: 3'- -CAGUAGCCgCCGGCu-CUCCU--UGCGcu -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 24391 | 0.7 | 0.554278 |
Target: 5'- cUCGUCGGCGGCgGGGcgguccuGGGGGCuCGGa -3' miRNA: 3'- cAGUAGCCGCCGgCUC-------UCCUUGcGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 81334 | 0.7 | 0.565186 |
Target: 5'- cGUCGUCGG-GGCCGucGGcGGGGCGgGGg -3' miRNA: 3'- -CAGUAGCCgCCGGC--UCuCCUUGCgCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 127641 | 0.72 | 0.450673 |
Target: 5'- -aCggCGGCGgcGCCGGGGGGcGCGCGGg -3' miRNA: 3'- caGuaGCCGC--CGGCUCUCCuUGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 137000 | 0.72 | 0.450673 |
Target: 5'- gGUCgAUCGuGCGGCCG-GAG-AGCGCGGc -3' miRNA: 3'- -CAG-UAGC-CGCCGGCuCUCcUUGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 12575 | 0.73 | 0.398347 |
Target: 5'- -aCG-CGG-GGCCGAGAGGGGCGCc- -3' miRNA: 3'- caGUaGCCgCCGGCUCUCCUUGCGcu -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 39371 | 0.8 | 0.159818 |
Target: 5'- cUCAUCGGCGGCCG--GGGAGgGCGGc -3' miRNA: 3'- cAGUAGCCGCCGGCucUCCUUgCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 2797 | 0.79 | 0.194999 |
Target: 5'- -cCGcCGGCGGCCGGGAGGGGCcggGCGGc -3' miRNA: 3'- caGUaGCCGCCGGCUCUCCUUG---CGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 13118 | 0.77 | 0.236768 |
Target: 5'- -gCGUCGGCGGCCGcGGGGcGCGUGu -3' miRNA: 3'- caGUAGCCGCCGGCuCUCCuUGCGCu -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 60837 | 0.77 | 0.242487 |
Target: 5'- aUCAUCGGCGGCgGcGAGGucGCGCGc -3' miRNA: 3'- cAGUAGCCGCCGgCuCUCCu-UGCGCu -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 34282 | 0.76 | 0.28578 |
Target: 5'- cUCA-CGGCGGCCGGcGGGGACGCc- -3' miRNA: 3'- cAGUaGCCGCCGGCUcUCCUUGCGcu -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 127378 | 0.76 | 0.28578 |
Target: 5'- uGUCGUUGGCGGCgGcGAGGAGCcCGGc -3' miRNA: 3'- -CAGUAGCCGCCGgCuCUCCUUGcGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 33816 | 0.74 | 0.373685 |
Target: 5'- uGUCuuUgGGCGGCCGGGGGG--CGCGGg -3' miRNA: 3'- -CAGu-AgCCGCCGGCUCUCCuuGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 86101 | 0.74 | 0.373685 |
Target: 5'- cUCGUCGGCGcCCGGGcgucGGAGCGCGc -3' miRNA: 3'- cAGUAGCCGCcGGCUCu---CCUUGCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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