Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23734 | 3' | -58.2 | NC_005261.1 | + | 34282 | 0.76 | 0.28578 |
Target: 5'- cUCA-CGGCGGCCGGcGGGGACGCc- -3' miRNA: 3'- cAGUaGCCGCCGGCUcUCCUUGCGcu -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 60837 | 0.77 | 0.242487 |
Target: 5'- aUCAUCGGCGGCgGcGAGGucGCGCGc -3' miRNA: 3'- cAGUAGCCGCCGgCuCUCCu-UGCGCu -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 13118 | 0.77 | 0.236768 |
Target: 5'- -gCGUCGGCGGCCGcGGGGcGCGUGu -3' miRNA: 3'- caGUAGCCGCCGGCuCUCCuUGCGCu -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 2797 | 0.79 | 0.194999 |
Target: 5'- -cCGcCGGCGGCCGGGAGGGGCcggGCGGc -3' miRNA: 3'- caGUaGCCGCCGGCUCUCCUUG---CGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 39371 | 0.8 | 0.159818 |
Target: 5'- cUCAUCGGCGGCCG--GGGAGgGCGGc -3' miRNA: 3'- cAGUAGCCGCCGGCucUCCUUgCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 74898 | 0.71 | 0.506555 |
Target: 5'- --aGUCGGCGGcCCGcgcuggccgcgcGGGGGAGgGCGAg -3' miRNA: 3'- cagUAGCCGCC-GGC------------UCUCCUUgCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 84950 | 0.71 | 0.516162 |
Target: 5'- cUCcUCGGCGGCCGccGAGGcgucgGGCGCGu -3' miRNA: 3'- cAGuAGCCGCCGGCu-CUCC-----UUGCGCu -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 15205 | 0.69 | 0.665786 |
Target: 5'- -cCAUCGcGCGGUCGuAGAGGcuCGcCGAg -3' miRNA: 3'- caGUAGC-CGCCGGC-UCUCCuuGC-GCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 74657 | 0.69 | 0.64563 |
Target: 5'- cGUCuUCGcGCaGGCCGGGGacGcGGACGCGAc -3' miRNA: 3'- -CAGuAGC-CG-CCGGCUCU--C-CUUGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 114371 | 0.69 | 0.625432 |
Target: 5'- --aGUCGGUGGCCGAGAaGuACGUGc -3' miRNA: 3'- cagUAGCCGCCGGCUCUcCuUGCGCu -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 101428 | 0.69 | 0.615337 |
Target: 5'- -aCGUCGGCcGCCGAG-GcGGCGCGGu -3' miRNA: 3'- caGUAGCCGcCGGCUCuCcUUGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 121635 | 0.7 | 0.605255 |
Target: 5'- ---cUCGGCGGCCGccgccGGcGAGCGCGGg -3' miRNA: 3'- caguAGCCGCCGGCuc---UC-CUUGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 128888 | 0.7 | 0.585154 |
Target: 5'- ----gCGGgGGCCGGGuGGGAgGCGGg -3' miRNA: 3'- caguaGCCgCCGGCUCuCCUUgCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 80051 | 0.7 | 0.57515 |
Target: 5'- cGUCGccacuggCGGCGGgCGcGGGGGGCGUGGg -3' miRNA: 3'- -CAGUa------GCCGCCgGCuCUCCUUGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 29417 | 0.7 | 0.57515 |
Target: 5'- -aCG-CGGCGGCCGcGGGGccCGCGGc -3' miRNA: 3'- caGUaGCCGCCGGCuCUCCuuGCGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 5844 | 0.7 | 0.574152 |
Target: 5'- gGUUA-CGGCGGCCGAGAGaGGggucucgACGaCGGa -3' miRNA: 3'- -CAGUaGCCGCCGGCUCUC-CU-------UGC-GCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 81334 | 0.7 | 0.565186 |
Target: 5'- cGUCGUCGG-GGCCGucGGcGGGGCGgGGg -3' miRNA: 3'- -CAGUAGCCgCCGGC--UCuCCUUGCgCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 24391 | 0.7 | 0.554278 |
Target: 5'- cUCGUCGGCGGCgGGGcgguccuGGGGGCuCGGa -3' miRNA: 3'- cAGUAGCCGCCGgCUC-------UCCUUGcGCU- -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 19446 | 0.71 | 0.5454 |
Target: 5'- cGUCGUCGG-GGCCGuuGAGGAagACGUu- -3' miRNA: 3'- -CAGUAGCCgCCGGCu-CUCCU--UGCGcu -5' |
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23734 | 3' | -58.2 | NC_005261.1 | + | 93562 | 0.71 | 0.5454 |
Target: 5'- gGUCGaCGGCGGUgcGGcGGGACGCGAu -3' miRNA: 3'- -CAGUaGCCGCCGgcUCuCCUUGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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