miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 5' -54.7 NC_005261.1 + 124930 0.65 0.939142
Target:  5'- --gGAGGCUCCGccgcgcgcgcuguGC-CGGCGCC-CUGg -3'
miRNA:   3'- ccaUUUUGAGGU-------------CGaGCCGCGGcGAC- -5'
23734 5' -54.7 NC_005261.1 + 48804 0.66 0.934707
Target:  5'- cGUGAGGC-CguGCgCGGCGuCCGCg- -3'
miRNA:   3'- cCAUUUUGaGguCGaGCCGC-GGCGac -5'
23734 5' -54.7 NC_005261.1 + 5109 0.66 0.934707
Target:  5'- ----cAGCUCCgccAGCUCGGCGCgGg-- -3'
miRNA:   3'- ccauuUUGAGG---UCGAGCCGCGgCgac -5'
23734 5' -54.7 NC_005261.1 + 57409 0.66 0.934707
Target:  5'- cGUGA---UCCgcGGC-CGGCGCCGCg- -3'
miRNA:   3'- cCAUUuugAGG--UCGaGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 27510 0.66 0.934707
Target:  5'- aGGUcuGGGCgggCCAGCUgGGC-CCGCc- -3'
miRNA:   3'- -CCAu-UUUGa--GGUCGAgCCGcGGCGac -5'
23734 5' -54.7 NC_005261.1 + 77549 0.66 0.934707
Target:  5'- uGGUAcgGCgccgccgCCAGU--GGCGCCGCc- -3'
miRNA:   3'- -CCAUuuUGa------GGUCGagCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 3838 0.66 0.934707
Target:  5'- cGGgcgcuGGCggCAGCggcgcCGGCGCCGCg- -3'
miRNA:   3'- -CCauu--UUGagGUCGa----GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 3551 0.66 0.934707
Target:  5'- ----cAGCgcggCgGGCgCGGCGCCGCUa -3'
miRNA:   3'- ccauuUUGa---GgUCGaGCCGCGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 52682 0.66 0.934707
Target:  5'- ---cGGGC-CCuGCUCGcgggcGCGCCGCUGc -3'
miRNA:   3'- ccauUUUGaGGuCGAGC-----CGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 78983 0.66 0.934707
Target:  5'- cGGgccuGCUCCAGCUUa--GCCGCg- -3'
miRNA:   3'- -CCauuuUGAGGUCGAGccgCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 94700 0.66 0.929544
Target:  5'- --gAGGACguggCCgAGCUgGaGCGCCGCUa -3'
miRNA:   3'- ccaUUUUGa---GG-UCGAgC-CGCGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 29855 0.66 0.929544
Target:  5'- -----uGCUCgccggccgcgCGGCgcCGGCGCCGCUGc -3'
miRNA:   3'- ccauuuUGAG----------GUCGa-GCCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 59474 0.66 0.929544
Target:  5'- gGGggcAGCgCCGGCgCGGcCGCCGCg- -3'
miRNA:   3'- -CCauuUUGaGGUCGaGCC-GCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 59002 0.66 0.929544
Target:  5'- cGGUGcgccGGGCUcgcCCAGC--GGCGCCGCc- -3'
miRNA:   3'- -CCAU----UUUGA---GGUCGagCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 63270 0.66 0.929544
Target:  5'- --aGGGGCUguacaCCGGCgaGGCGCCGCUc -3'
miRNA:   3'- ccaUUUUGA-----GGUCGagCCGCGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 95644 0.66 0.929544
Target:  5'- uGGgcGAGCgCgAcGCgCGGCGCCGCg- -3'
miRNA:   3'- -CCauUUUGaGgU-CGaGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 62243 0.66 0.928482
Target:  5'- cGGUGcuGCacgUCCGGCgucaccugguagCGGCGcCCGUUGu -3'
miRNA:   3'- -CCAUuuUG---AGGUCGa-----------GCCGC-GGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 43333 0.66 0.927947
Target:  5'- cGGUAcguAGACU--GGCUCgugugccuggggcuGGUGCCGCUGc -3'
miRNA:   3'- -CCAU---UUUGAggUCGAG--------------CCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 118120 0.66 0.924134
Target:  5'- -----uGCgccgCCGGCUC-GCGCCGCUc -3'
miRNA:   3'- ccauuuUGa---GGUCGAGcCGCGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 97748 0.66 0.924134
Target:  5'- --aGGGGCggggCgGGCUCGGCGgCGCg- -3'
miRNA:   3'- ccaUUUUGa---GgUCGAGCCGCgGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.