miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 5' -54.7 NC_005261.1 + 57409 0.66 0.934707
Target:  5'- cGUGA---UCCgcGGC-CGGCGCCGCg- -3'
miRNA:   3'- cCAUUuugAGG--UCGaGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 78983 0.66 0.934707
Target:  5'- cGGgccuGCUCCAGCUUa--GCCGCg- -3'
miRNA:   3'- -CCauuuUGAGGUCGAGccgCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 59002 0.66 0.929544
Target:  5'- cGGUGcgccGGGCUcgcCCAGC--GGCGCCGCc- -3'
miRNA:   3'- -CCAU----UUUGA---GGUCGagCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 62243 0.66 0.928482
Target:  5'- cGGUGcuGCacgUCCGGCgucaccugguagCGGCGcCCGUUGu -3'
miRNA:   3'- -CCAUuuUG---AGGUCGa-----------GCCGC-GGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 3551 0.66 0.934707
Target:  5'- ----cAGCgcggCgGGCgCGGCGCCGCUa -3'
miRNA:   3'- ccauuUUGa---GgUCGaGCCGCGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 77549 0.66 0.934707
Target:  5'- uGGUAcgGCgccgccgCCAGU--GGCGCCGCc- -3'
miRNA:   3'- -CCAUuuUGa------GGUCGagCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 48804 0.66 0.934707
Target:  5'- cGUGAGGC-CguGCgCGGCGuCCGCg- -3'
miRNA:   3'- cCAUUUUGaGguCGaGCCGC-GGCGac -5'
23734 5' -54.7 NC_005261.1 + 59474 0.66 0.929544
Target:  5'- gGGggcAGCgCCGGCgCGGcCGCCGCg- -3'
miRNA:   3'- -CCauuUUGaGGUCGaGCC-GCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 94700 0.66 0.929544
Target:  5'- --gAGGACguggCCgAGCUgGaGCGCCGCUa -3'
miRNA:   3'- ccaUUUUGa---GG-UCGAgC-CGCGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 120620 0.67 0.900037
Target:  5'- cGUGGGGCUCCuGCUggUGGCgGCC-CUGu -3'
miRNA:   3'- cCAUUUUGAGGuCGA--GCCG-CGGcGAC- -5'
23734 5' -54.7 NC_005261.1 + 83494 0.67 0.879441
Target:  5'- cGUAGAGCgCCAgGCgCGcGCGCCGgUGg -3'
miRNA:   3'- cCAUUUUGaGGU-CGaGC-CGCGGCgAC- -5'
23734 5' -54.7 NC_005261.1 + 35102 0.67 0.893407
Target:  5'- cGGUGAGcgGCgagccccCCAGCcgccggCGGCGUCGCa- -3'
miRNA:   3'- -CCAUUU--UGa------GGUCGa-----GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 54307 0.67 0.906427
Target:  5'- cGGUuaacaccAGCUCCAGCaaGGCGUgGCc- -3'
miRNA:   3'- -CCAuu-----UUGAGGUCGagCCGCGgCGac -5'
23734 5' -54.7 NC_005261.1 + 188 0.67 0.900037
Target:  5'- uGGU---GCUCCcggGGCcagCGGUGCCGCc- -3'
miRNA:   3'- -CCAuuuUGAGG---UCGa--GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 64022 0.67 0.905799
Target:  5'- aGGUGAGcguguucucgucgGCg-CGGCUCuGCGCCGCg- -3'
miRNA:   3'- -CCAUUU-------------UGagGUCGAGcCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 48433 0.67 0.88654
Target:  5'- cGGUAcAGCUCgCGGUgcgUGGCGCgGCc- -3'
miRNA:   3'- -CCAUuUUGAG-GUCGa--GCCGCGgCGac -5'
23734 5' -54.7 NC_005261.1 + 22797 0.67 0.88654
Target:  5'- gGGUugucGCggCCGGCggCGGCGCUGCc- -3'
miRNA:   3'- -CCAuuu-UGa-GGUCGa-GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 82942 0.67 0.879441
Target:  5'- cGUAAAg--CCAGCgCGGCGCCGg-- -3'
miRNA:   3'- cCAUUUugaGGUCGaGCCGCGGCgac -5'
23734 5' -54.7 NC_005261.1 + 134087 0.67 0.879441
Target:  5'- uGUGcGAGCUCuCGGCgcgcCGGCGCgCGCUc -3'
miRNA:   3'- cCAU-UUUGAG-GUCGa---GCCGCG-GCGAc -5'
23734 5' -54.7 NC_005261.1 + 134357 0.67 0.900037
Target:  5'- -----cGCgccgCCGcGCggggggCGGCGCCGCUGg -3'
miRNA:   3'- ccauuuUGa---GGU-CGa-----GCCGCGGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.