Results 41 - 60 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23734 | 5' | -54.7 | NC_005261.1 | + | 134087 | 0.67 | 0.879441 |
Target: 5'- uGUGcGAGCUCuCGGCgcgcCGGCGCgCGCUc -3' miRNA: 3'- cCAU-UUUGAG-GUCGa---GCCGCG-GCGAc -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 83494 | 0.67 | 0.879441 |
Target: 5'- cGUAGAGCgCCAgGCgCGcGCGCCGgUGg -3' miRNA: 3'- cCAUUUUGaGGU-CGaGC-CGCGGCgAC- -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 5523 | 0.67 | 0.906427 |
Target: 5'- cGGcGAGGCcgCCGGCuUCGGCGCgcaGCg- -3' miRNA: 3'- -CCaUUUUGa-GGUCG-AGCCGCGg--CGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 54307 | 0.67 | 0.906427 |
Target: 5'- cGGUuaacaccAGCUCCAGCaaGGCGUgGCc- -3' miRNA: 3'- -CCAuu-----UUGAGGUCGagCCGCGgCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 3517 | 0.67 | 0.879441 |
Target: 5'- cGGccgc-CUCCAGCgCGGCGgCCGCc- -3' miRNA: 3'- -CCauuuuGAGGUCGaGCCGC-GGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 56624 | 0.67 | 0.879441 |
Target: 5'- cGUGGAGCcccCCAGCgaccagacgCGGgGCgCGCUGg -3' miRNA: 3'- cCAUUUUGa--GGUCGa--------GCCgCG-GCGAC- -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 85329 | 0.68 | 0.856801 |
Target: 5'- cGGUGGAACUgcuucaCCAGaaagcccagCGGC-CCGCUGa -3' miRNA: 3'- -CCAUUUUGA------GGUCga-------GCCGcGGCGAC- -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 126904 | 0.68 | 0.856801 |
Target: 5'- cGGgGAAGC-CCAGCUCGGU-CUGCa- -3' miRNA: 3'- -CCaUUUUGaGGUCGAGCCGcGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 28872 | 0.68 | 0.856801 |
Target: 5'- -uUGAGGCUgCGGCgCGGaCGCCGCc- -3' miRNA: 3'- ccAUUUUGAgGUCGaGCC-GCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 124063 | 0.68 | 0.856801 |
Target: 5'- aGGUAcAGCUCggccgacugCAGCcCGGCGcCCGCg- -3' miRNA: 3'- -CCAUuUUGAG---------GUCGaGCCGC-GGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 124250 | 0.68 | 0.848826 |
Target: 5'- cGGgcAGGCgCC-GCgCGGCGCCGCc- -3' miRNA: 3'- -CCauUUUGaGGuCGaGCCGCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 102381 | 0.68 | 0.848826 |
Target: 5'- -----cGCUCCAGCgCGGCGCgcaGCUc -3' miRNA: 3'- ccauuuUGAGGUCGaGCCGCGg--CGAc -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 5242 | 0.68 | 0.848826 |
Target: 5'- aGGUcGAGCguggCCGGCUCGuGC-CCGCc- -3' miRNA: 3'- -CCAuUUUGa---GGUCGAGC-CGcGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 103274 | 0.68 | 0.848826 |
Target: 5'- -----cGCUCCAGCgcgccgGGUGCCGCg- -3' miRNA: 3'- ccauuuUGAGGUCGag----CCGCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 125755 | 0.68 | 0.840648 |
Target: 5'- gGGgccAGGGCUgCCgcgGGCUCGGCuaaggccaagGCCGCUGc -3' miRNA: 3'- -CCa--UUUUGA-GG---UCGAGCCG----------CGGCGAC- -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 70651 | 0.68 | 0.840648 |
Target: 5'- -----cGCUgaGGUUCGGCGCCGCg- -3' miRNA: 3'- ccauuuUGAggUCGAGCCGCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 15615 | 0.68 | 0.838155 |
Target: 5'- aGGUAGcGCagCAGCUCGacggucccguuguaGCGCCGCc- -3' miRNA: 3'- -CCAUUuUGagGUCGAGC--------------CGCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 54838 | 0.68 | 0.832273 |
Target: 5'- cGGgcAGGg-CUAGCUgcCGGCGCCGCa- -3' miRNA: 3'- -CCauUUUgaGGUCGA--GCCGCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 110225 | 0.68 | 0.864566 |
Target: 5'- cGGcGAcgcCUCCAGCgugggCGGCGCgGCg- -3' miRNA: 3'- -CCaUUuu-GAGGUCGa----GCCGCGgCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 92173 | 0.68 | 0.872115 |
Target: 5'- cGGUGGAGCcgCCgGGCcCGacgcCGCCGCUGg -3' miRNA: 3'- -CCAUUUUGa-GG-UCGaGCc---GCGGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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