miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 5' -54.7 NC_005261.1 + 130222 0.71 0.678763
Target:  5'- cGGaAGAGCgucggCCcGCUCaGGCGCCGCg- -3'
miRNA:   3'- -CCaUUUUGa----GGuCGAG-CCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 120501 0.71 0.678763
Target:  5'- --------aCCGGCUaccCGGCGCCGCUGc -3'
miRNA:   3'- ccauuuugaGGUCGA---GCCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 60143 0.71 0.678763
Target:  5'- ---cGGGCUCCcaGGCgcugcaGGCGCCGCUGc -3'
miRNA:   3'- ccauUUUGAGG--UCGag----CCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 61529 0.71 0.689058
Target:  5'- cGGgccuuCUCCGGCaagcgccgCGGCGCCGCc- -3'
miRNA:   3'- -CCauuuuGAGGUCGa-------GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 57567 0.71 0.689058
Target:  5'- -----cGC-CCGGCUcCGGCGCCGCg- -3'
miRNA:   3'- ccauuuUGaGGUCGA-GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 80109 0.71 0.695213
Target:  5'- cGGUAccGGCUUgGGCgccgcggcagcggCGGCGCCGCUa -3'
miRNA:   3'- -CCAUu-UUGAGgUCGa------------GCCGCGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 49577 0.7 0.739614
Target:  5'- cGUGAAcacggGCUCgGgGCgcgCGGCGCUGCUGu -3'
miRNA:   3'- cCAUUU-----UGAGgU-CGa--GCCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 92841 0.7 0.739614
Target:  5'- aGUccAGCUCCAGCUCccgGGCccgGCCGCa- -3'
miRNA:   3'- cCAuuUUGAGGUCGAG---CCG---CGGCGac -5'
23734 5' -54.7 NC_005261.1 + 57331 0.7 0.739614
Target:  5'- ----cAGCUgCCAGC-CGGCGCCGUUc -3'
miRNA:   3'- ccauuUUGA-GGUCGaGCCGCGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 56843 0.7 0.749473
Target:  5'- cGGcAAGAC-CUGGUUCcuGGUGCCGCUGa -3'
miRNA:   3'- -CCaUUUUGaGGUCGAG--CCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 67797 0.7 0.759226
Target:  5'- ------cCUCCGcCUCGGCGCCGCc- -3'
miRNA:   3'- ccauuuuGAGGUcGAGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 56274 0.7 0.759226
Target:  5'- gGGU---ACUgCgAGCU-GGCGCCGCUGu -3'
miRNA:   3'- -CCAuuuUGA-GgUCGAgCCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 118902 0.7 0.759226
Target:  5'- uGGUGGccugcgucuGGgUCCGGCgccgcgggcgCGGCGCCGCg- -3'
miRNA:   3'- -CCAUU---------UUgAGGUCGa---------GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 30142 0.7 0.759226
Target:  5'- cGGUGGAGCgcgcgcgCCuuagCGGCGCCGCg- -3'
miRNA:   3'- -CCAUUUUGa------GGucgaGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 1521 0.7 0.768862
Target:  5'- cGGgcGccAGCUCCAGCgc-GCGCCGCc- -3'
miRNA:   3'- -CCauU--UUGAGGUCGagcCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 15356 0.7 0.775533
Target:  5'- gGGaAAGACgucCCGGCggcgcucggcgcccUCGGCGCCGCc- -3'
miRNA:   3'- -CCaUUUUGa--GGUCG--------------AGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 12775 0.7 0.778373
Target:  5'- cGGUGgcgggGGGCUCguCGGCgagcucgucgUCGGCGUCGCUGc -3'
miRNA:   3'- -CCAU-----UUUGAG--GUCG----------AGCCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 134418 0.7 0.778373
Target:  5'- cGUGAAcugcuGCUCCAcGCUgcucgCGGgGCUGCUGg -3'
miRNA:   3'- cCAUUU-----UGAGGU-CGA-----GCCgCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 21632 0.7 0.778373
Target:  5'- gGGUccccGCcCCGGCgCGGaCGCCGCUGc -3'
miRNA:   3'- -CCAuuu-UGaGGUCGaGCC-GCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 77325 0.69 0.787748
Target:  5'- --cGGAGCUUCcGC-CGGCGCCGCc- -3'
miRNA:   3'- ccaUUUUGAGGuCGaGCCGCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.