miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 5' -54.7 NC_005261.1 + 25798 0.69 0.787748
Target:  5'- aGGaUGGAGCUCaGGCgccaucuggUGGCGCCGCg- -3'
miRNA:   3'- -CC-AUUUUGAGgUCGa--------GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 127768 0.69 0.791458
Target:  5'- cGGgcgcgAAGACgcCCGGCUgcucgagcggcgggcCGGCGCCGCg- -3'
miRNA:   3'- -CCa----UUUUGa-GGUCGA---------------GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 136485 0.69 0.814969
Target:  5'- cGGgcAgcAGCgagCAGCUCGGCGCCGaCg- -3'
miRNA:   3'- -CCauU--UUGag-GUCGAGCCGCGGC-Gac -5'
23734 5' -54.7 NC_005261.1 + 36982 0.69 0.814969
Target:  5'- cGGUGcGGGCUCCAGC-CGGaGCCcgcggGCUGc -3'
miRNA:   3'- -CCAU-UUUGAGGUCGaGCCgCGG-----CGAC- -5'
23734 5' -54.7 NC_005261.1 + 98674 0.69 0.814969
Target:  5'- aGGgcGGGCUCC-GC-CGGgGCCGgaGg -3'
miRNA:   3'- -CCauUUUGAGGuCGaGCCgCGGCgaC- -5'
23734 5' -54.7 NC_005261.1 + 59796 0.69 0.814969
Target:  5'- cGgcGGGCggcaggCCGGCgUGGCGCCGCg- -3'
miRNA:   3'- cCauUUUGa-----GGUCGaGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 89931 0.69 0.823711
Target:  5'- -cUGGAGCUgUCGGCggUGGCGCgGCUGg -3'
miRNA:   3'- ccAUUUUGA-GGUCGa-GCCGCGgCGAC- -5'
23734 5' -54.7 NC_005261.1 + 16269 0.68 0.832273
Target:  5'- gGGgccGGGCUUCGGCUCgcccgggggGGCGCCGUc- -3'
miRNA:   3'- -CCau-UUUGAGGUCGAG---------CCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 54838 0.68 0.832273
Target:  5'- cGGgcAGGg-CUAGCUgcCGGCGCCGCa- -3'
miRNA:   3'- -CCauUUUgaGGUCGA--GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 15615 0.68 0.838155
Target:  5'- aGGUAGcGCagCAGCUCGacggucccguuguaGCGCCGCc- -3'
miRNA:   3'- -CCAUUuUGagGUCGAGC--------------CGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 70651 0.68 0.840648
Target:  5'- -----cGCUgaGGUUCGGCGCCGCg- -3'
miRNA:   3'- ccauuuUGAggUCGAGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 125755 0.68 0.840648
Target:  5'- gGGgccAGGGCUgCCgcgGGCUCGGCuaaggccaagGCCGCUGc -3'
miRNA:   3'- -CCa--UUUUGA-GG---UCGAGCCG----------CGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 124250 0.68 0.848826
Target:  5'- cGGgcAGGCgCC-GCgCGGCGCCGCc- -3'
miRNA:   3'- -CCauUUUGaGGuCGaGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 102381 0.68 0.848826
Target:  5'- -----cGCUCCAGCgCGGCGCgcaGCUc -3'
miRNA:   3'- ccauuuUGAGGUCGaGCCGCGg--CGAc -5'
23734 5' -54.7 NC_005261.1 + 5242 0.68 0.848826
Target:  5'- aGGUcGAGCguggCCGGCUCGuGC-CCGCc- -3'
miRNA:   3'- -CCAuUUUGa---GGUCGAGC-CGcGGCGac -5'
23734 5' -54.7 NC_005261.1 + 103274 0.68 0.848826
Target:  5'- -----cGCUCCAGCgcgccgGGUGCCGCg- -3'
miRNA:   3'- ccauuuUGAGGUCGag----CCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 28872 0.68 0.856801
Target:  5'- -uUGAGGCUgCGGCgCGGaCGCCGCc- -3'
miRNA:   3'- ccAUUUUGAgGUCGaGCC-GCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 85329 0.68 0.856801
Target:  5'- cGGUGGAACUgcuucaCCAGaaagcccagCGGC-CCGCUGa -3'
miRNA:   3'- -CCAUUUUGA------GGUCga-------GCCGcGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 126904 0.68 0.856801
Target:  5'- cGGgGAAGC-CCAGCUCGGU-CUGCa- -3'
miRNA:   3'- -CCaUUUUGaGGUCGAGCCGcGGCGac -5'
23734 5' -54.7 NC_005261.1 + 6354 0.68 0.856801
Target:  5'- cGGccucGCgCCGGUcCGGCGCCGCUc -3'
miRNA:   3'- -CCauuuUGaGGUCGaGCCGCGGCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.