miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 5' -54.7 NC_005261.1 + 28872 0.68 0.856801
Target:  5'- -uUGAGGCUgCGGCgCGGaCGCCGCc- -3'
miRNA:   3'- ccAUUUUGAgGUCGaGCC-GCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 124063 0.68 0.856801
Target:  5'- aGGUAcAGCUCggccgacugCAGCcCGGCGcCCGCg- -3'
miRNA:   3'- -CCAUuUUGAG---------GUCGaGCCGC-GGCGac -5'
23734 5' -54.7 NC_005261.1 + 110225 0.68 0.864566
Target:  5'- cGGcGAcgcCUCCAGCgugggCGGCGCgGCg- -3'
miRNA:   3'- -CCaUUuu-GAGGUCGa----GCCGCGgCGac -5'
23734 5' -54.7 NC_005261.1 + 70368 0.68 0.864566
Target:  5'- cGGcgcgcCUCCA---CGGCGCCGCUGg -3'
miRNA:   3'- -CCauuuuGAGGUcgaGCCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 32171 0.68 0.864566
Target:  5'- cGGUGu-ACcuggCCuGCgggCGGCGCgCGCUGg -3'
miRNA:   3'- -CCAUuuUGa---GGuCGa--GCCGCG-GCGAC- -5'
23734 5' -54.7 NC_005261.1 + 21670 0.68 0.864566
Target:  5'- cGGUAcguGCUCCGGCUgGggcucgagcGCGUCGCg- -3'
miRNA:   3'- -CCAUuu-UGAGGUCGAgC---------CGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 125315 0.68 0.872115
Target:  5'- cGGgc--GCUCCgcGGcCUCGGCGuCCGCa- -3'
miRNA:   3'- -CCauuuUGAGG--UC-GAGCCGC-GGCGac -5'
23734 5' -54.7 NC_005261.1 + 122725 0.68 0.872115
Target:  5'- cGUcGAugUUCAcgUCGGCGCCGCUc -3'
miRNA:   3'- cCAuUUugAGGUcgAGCCGCGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 92173 0.68 0.872115
Target:  5'- cGGUGGAGCcgCCgGGCcCGacgcCGCCGCUGg -3'
miRNA:   3'- -CCAUUUUGa-GG-UCGaGCc---GCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 51764 0.68 0.872115
Target:  5'- cGUGAAGCUggcgCUGGC-CGGCGUCGCc- -3'
miRNA:   3'- cCAUUUUGA----GGUCGaGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 3795 0.68 0.872115
Target:  5'- cGGUccg---CCAGCUCGcGCaGCCGCUc -3'
miRNA:   3'- -CCAuuuugaGGUCGAGC-CG-CGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 137015 0.68 0.872115
Target:  5'- cGG-AGAGCgcggCCAGCagaaCGGCGUCGgUGg -3'
miRNA:   3'- -CCaUUUUGa---GGUCGa---GCCGCGGCgAC- -5'
23734 5' -54.7 NC_005261.1 + 82942 0.67 0.879441
Target:  5'- cGUAAAg--CCAGCgCGGCGCCGg-- -3'
miRNA:   3'- cCAUUUugaGGUCGaGCCGCGGCgac -5'
23734 5' -54.7 NC_005261.1 + 134087 0.67 0.879441
Target:  5'- uGUGcGAGCUCuCGGCgcgcCGGCGCgCGCUc -3'
miRNA:   3'- cCAU-UUUGAG-GUCGa---GCCGCG-GCGAc -5'
23734 5' -54.7 NC_005261.1 + 83494 0.67 0.879441
Target:  5'- cGUAGAGCgCCAgGCgCGcGCGCCGgUGg -3'
miRNA:   3'- cCAUUUUGaGGU-CGaGC-CGCGGCgAC- -5'
23734 5' -54.7 NC_005261.1 + 56624 0.67 0.879441
Target:  5'- cGUGGAGCcccCCAGCgaccagacgCGGgGCgCGCUGg -3'
miRNA:   3'- cCAUUUUGa--GGUCGa--------GCCgCG-GCGAC- -5'
23734 5' -54.7 NC_005261.1 + 3517 0.67 0.879441
Target:  5'- cGGccgc-CUCCAGCgCGGCGgCCGCc- -3'
miRNA:   3'- -CCauuuuGAGGUCGaGCCGC-GGCGac -5'
23734 5' -54.7 NC_005261.1 + 22797 0.67 0.88654
Target:  5'- gGGUugucGCggCCGGCggCGGCGCUGCc- -3'
miRNA:   3'- -CCAuuu-UGa-GGUCGa-GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 48433 0.67 0.88654
Target:  5'- cGGUAcAGCUCgCGGUgcgUGGCGCgGCc- -3'
miRNA:   3'- -CCAUuUUGAG-GUCGa--GCCGCGgCGac -5'
23734 5' -54.7 NC_005261.1 + 27887 0.67 0.893407
Target:  5'- cGUA--AC-CCGGCgcgcaUCGGcCGCCGCUGc -3'
miRNA:   3'- cCAUuuUGaGGUCG-----AGCC-GCGGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.