Results 41 - 60 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23734 | 5' | -54.7 | NC_005261.1 | + | 22797 | 0.67 | 0.88654 |
Target: 5'- gGGUugucGCggCCGGCggCGGCGCUGCc- -3' miRNA: 3'- -CCAuuu-UGa-GGUCGa-GCCGCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 3517 | 0.67 | 0.879441 |
Target: 5'- cGGccgc-CUCCAGCgCGGCGgCCGCc- -3' miRNA: 3'- -CCauuuuGAGGUCGaGCCGC-GGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 56624 | 0.67 | 0.879441 |
Target: 5'- cGUGGAGCcccCCAGCgaccagacgCGGgGCgCGCUGg -3' miRNA: 3'- cCAUUUUGa--GGUCGa--------GCCgCG-GCGAC- -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 83494 | 0.67 | 0.879441 |
Target: 5'- cGUAGAGCgCCAgGCgCGcGCGCCGgUGg -3' miRNA: 3'- cCAUUUUGaGGU-CGaGC-CGCGGCgAC- -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 134087 | 0.67 | 0.879441 |
Target: 5'- uGUGcGAGCUCuCGGCgcgcCGGCGCgCGCUc -3' miRNA: 3'- cCAU-UUUGAG-GUCGa---GCCGCG-GCGAc -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 82942 | 0.67 | 0.879441 |
Target: 5'- cGUAAAg--CCAGCgCGGCGCCGg-- -3' miRNA: 3'- cCAUUUugaGGUCGaGCCGCGGCgac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 137015 | 0.68 | 0.872115 |
Target: 5'- cGG-AGAGCgcggCCAGCagaaCGGCGUCGgUGg -3' miRNA: 3'- -CCaUUUUGa---GGUCGa---GCCGCGGCgAC- -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 3795 | 0.68 | 0.872115 |
Target: 5'- cGGUccg---CCAGCUCGcGCaGCCGCUc -3' miRNA: 3'- -CCAuuuugaGGUCGAGC-CG-CGGCGAc -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 92173 | 0.68 | 0.872115 |
Target: 5'- cGGUGGAGCcgCCgGGCcCGacgcCGCCGCUGg -3' miRNA: 3'- -CCAUUUUGa-GG-UCGaGCc---GCGGCGAC- -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 122725 | 0.68 | 0.872115 |
Target: 5'- cGUcGAugUUCAcgUCGGCGCCGCUc -3' miRNA: 3'- cCAuUUugAGGUcgAGCCGCGGCGAc -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 125315 | 0.68 | 0.872115 |
Target: 5'- cGGgc--GCUCCgcGGcCUCGGCGuCCGCa- -3' miRNA: 3'- -CCauuuUGAGG--UC-GAGCCGC-GGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 51764 | 0.68 | 0.872115 |
Target: 5'- cGUGAAGCUggcgCUGGC-CGGCGUCGCc- -3' miRNA: 3'- cCAUUUUGA----GGUCGaGCCGCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 21670 | 0.68 | 0.864566 |
Target: 5'- cGGUAcguGCUCCGGCUgGggcucgagcGCGUCGCg- -3' miRNA: 3'- -CCAUuu-UGAGGUCGAgC---------CGCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 32171 | 0.68 | 0.864566 |
Target: 5'- cGGUGu-ACcuggCCuGCgggCGGCGCgCGCUGg -3' miRNA: 3'- -CCAUuuUGa---GGuCGa--GCCGCG-GCGAC- -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 70368 | 0.68 | 0.864566 |
Target: 5'- cGGcgcgcCUCCA---CGGCGCCGCUGg -3' miRNA: 3'- -CCauuuuGAGGUcgaGCCGCGGCGAC- -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 110225 | 0.68 | 0.864566 |
Target: 5'- cGGcGAcgcCUCCAGCgugggCGGCGCgGCg- -3' miRNA: 3'- -CCaUUuu-GAGGUCGa----GCCGCGgCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 124063 | 0.68 | 0.856801 |
Target: 5'- aGGUAcAGCUCggccgacugCAGCcCGGCGcCCGCg- -3' miRNA: 3'- -CCAUuUUGAG---------GUCGaGCCGC-GGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 28872 | 0.68 | 0.856801 |
Target: 5'- -uUGAGGCUgCGGCgCGGaCGCCGCc- -3' miRNA: 3'- ccAUUUUGAgGUCGaGCC-GCGGCGac -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 85329 | 0.68 | 0.856801 |
Target: 5'- cGGUGGAACUgcuucaCCAGaaagcccagCGGC-CCGCUGa -3' miRNA: 3'- -CCAUUUUGA------GGUCga-------GCCGcGGCGAC- -5' |
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23734 | 5' | -54.7 | NC_005261.1 | + | 126904 | 0.68 | 0.856801 |
Target: 5'- cGGgGAAGC-CCAGCUCGGU-CUGCa- -3' miRNA: 3'- -CCaUUUUGaGGUCGAGCCGcGGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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