miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23734 5' -54.7 NC_005261.1 + 188 0.67 0.900037
Target:  5'- uGGU---GCUCCcggGGCcagCGGUGCCGCc- -3'
miRNA:   3'- -CCAuuuUGAGG---UCGa--GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 544 0.76 0.428761
Target:  5'- aGGgcGGACggCGGCUCGGcCGCCGCg- -3'
miRNA:   3'- -CCauUUUGagGUCGAGCC-GCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 1521 0.7 0.768862
Target:  5'- cGGgcGccAGCUCCAGCgc-GCGCCGCc- -3'
miRNA:   3'- -CCauU--UUGAGGUCGagcCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 1817 0.66 0.924134
Target:  5'- gGGUAGAGCcgcgcguaagCGGcCUCGGCGCgCGCg- -3'
miRNA:   3'- -CCAUUUUGag--------GUC-GAGCCGCG-GCGac -5'
23734 5' -54.7 NC_005261.1 + 3517 0.67 0.879441
Target:  5'- cGGccgc-CUCCAGCgCGGCGgCCGCc- -3'
miRNA:   3'- -CCauuuuGAGGUCGaGCCGC-GGCGac -5'
23734 5' -54.7 NC_005261.1 + 3551 0.66 0.934707
Target:  5'- ----cAGCgcggCgGGCgCGGCGCCGCUa -3'
miRNA:   3'- ccauuUUGa---GgUCGaGCCGCGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 3795 0.68 0.872115
Target:  5'- cGGUccg---CCAGCUCGcGCaGCCGCUc -3'
miRNA:   3'- -CCAuuuugaGGUCGAGC-CG-CGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 3838 0.66 0.934707
Target:  5'- cGGgcgcuGGCggCAGCggcgcCGGCGCCGCg- -3'
miRNA:   3'- -CCauu--UUGagGUCGa----GCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 5109 0.66 0.934707
Target:  5'- ----cAGCUCCgccAGCUCGGCGCgGg-- -3'
miRNA:   3'- ccauuUUGAGG---UCGAGCCGCGgCgac -5'
23734 5' -54.7 NC_005261.1 + 5242 0.68 0.848826
Target:  5'- aGGUcGAGCguggCCGGCUCGuGC-CCGCc- -3'
miRNA:   3'- -CCAuUUUGa---GGUCGAGC-CGcGGCGac -5'
23734 5' -54.7 NC_005261.1 + 5523 0.67 0.906427
Target:  5'- cGGcGAGGCcgCCGGCuUCGGCGCgcaGCg- -3'
miRNA:   3'- -CCaUUUUGa-GGUCG-AGCCGCGg--CGac -5'
23734 5' -54.7 NC_005261.1 + 5891 0.66 0.918478
Target:  5'- uGGcucGGCUggCUAGCUCGGCcgGCCgGCUGg -3'
miRNA:   3'- -CCauuUUGA--GGUCGAGCCG--CGG-CGAC- -5'
23734 5' -54.7 NC_005261.1 + 6354 0.68 0.856801
Target:  5'- cGGccucGCgCCGGUcCGGCGCCGCUc -3'
miRNA:   3'- -CCauuuUGaGGUCGaGCCGCGGCGAc -5'
23734 5' -54.7 NC_005261.1 + 12091 0.66 0.918478
Target:  5'- cGGggcGGCUCaaaGGCgCGGCGCCaGCUc -3'
miRNA:   3'- -CCauuUUGAGg--UCGaGCCGCGG-CGAc -5'
23734 5' -54.7 NC_005261.1 + 12775 0.7 0.778373
Target:  5'- cGGUGgcgggGGGCUCguCGGCgagcucgucgUCGGCGUCGCUGc -3'
miRNA:   3'- -CCAU-----UUUGAG--GUCG----------AGCCGCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 15356 0.7 0.775533
Target:  5'- gGGaAAGACgucCCGGCggcgcucggcgcccUCGGCGCCGCc- -3'
miRNA:   3'- -CCaUUUUGa--GGUCG--------------AGCCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 15615 0.68 0.838155
Target:  5'- aGGUAGcGCagCAGCUCGacggucccguuguaGCGCCGCc- -3'
miRNA:   3'- -CCAUUuUGagGUCGAGC--------------CGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 16269 0.68 0.832273
Target:  5'- gGGgccGGGCUUCGGCUCgcccgggggGGCGCCGUc- -3'
miRNA:   3'- -CCau-UUUGAGGUCGAG---------CCGCGGCGac -5'
23734 5' -54.7 NC_005261.1 + 21632 0.7 0.778373
Target:  5'- gGGUccccGCcCCGGCgCGGaCGCCGCUGc -3'
miRNA:   3'- -CCAuuu-UGaGGUCGaGCC-GCGGCGAC- -5'
23734 5' -54.7 NC_005261.1 + 21670 0.68 0.864566
Target:  5'- cGGUAcguGCUCCGGCUgGggcucgagcGCGUCGCg- -3'
miRNA:   3'- -CCAUuu-UGAGGUCGAgC---------CGCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.